Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_t00022 and ECD_00888 are separated by 252 nucleotides ECD_00888 and ECD_00889 are separated by 284 nucleotides ECD_00889 and ECD_00890 are separated by 41 nucleotides
ECD_t00022: ECD_t00022 - tRNA-Ser, at 930,941 to 931,028
_t00022
ECD_00888: ECD_00888 - translation initiation factor IF-1, at 931,281 to 931,499
_00888
ECD_00889: ECD_00889 - leucyl/phenylalanyl-tRNA-protein transferase, at 931,784 to 932,488
_00889
ECD_00890: ECD_00890 - glutathione/cysteine ABC transporter export permease/ATPase, at 932,530 to 934,251
_00890
Position (kb) 931
932
933 Strain fitness (log2 ratio) -2
-1
0
1 at 930.896 kb on - strand at 931.156 kb on - strand at 931.156 kb on - strand at 931.160 kb on - strand at 931.274 kb on - strand at 931.611 kb on - strand at 931.611 kb on - strand at 931.652 kb on + strand at 931.653 kb on - strand at 931.653 kb on - strand at 932.033 kb on + strand, within ECD_00889 at 932.055 kb on + strand, within ECD_00889 at 932.056 kb on - strand, within ECD_00889 at 932.430 kb on - strand at 932.430 kb on - strand at 932.524 kb on - strand at 932.526 kb on + strand at 932.527 kb on - strand at 932.532 kb on - strand at 932.627 kb on - strand at 932.627 kb on - strand at 932.627 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 930,896 - +0.6 931,156 - +0.6 931,156 - +0.5 931,160 - -0.1 931,274 - -0.5 931,611 - -0.2 931,611 - -0.4 931,652 + +0.4 931,653 - +0.6 931,653 - +0.1 932,033 + ECD_00889 0.35 -0.6 932,055 + ECD_00889 0.38 -0.6 932,056 - ECD_00889 0.39 -0.9 932,430 - +0.5 932,430 - +1.3 932,524 - +0.1 932,526 + -0.7 932,527 - -0.0 932,532 - +1.1 932,627 - -1.6 932,627 - +0.2 932,627 - -1.8
Or see this region's nucleotide sequence