Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00879 and ECD_00880 are separated by 494 nucleotides ECD_00880 and ECD_00881 are separated by 424 nucleotides
ECD_00879: ECD_00879 - putative transporter, at 918,662 to 919,561
_00879
ECD_00880: ECD_00880 - aquaporin Z, at 920,056 to 920,751
_00880
ECD_00881: ECD_00881 - putative OLD family ATP-dependent endonuclease; DUF2813 family protein, at 921,176 to 922,834
_00881
Position (kb) 920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 919.133 kb on + strand, within ECD_00879 at 919.176 kb on - strand, within ECD_00879 at 919.176 kb on - strand, within ECD_00879 at 919.176 kb on - strand, within ECD_00879 at 919.337 kb on - strand, within ECD_00879 at 919.445 kb on - strand, within ECD_00879 at 919.466 kb on + strand, within ECD_00879 at 919.466 kb on + strand, within ECD_00879 at 919.697 kb on + strand at 919.710 kb on + strand at 919.955 kb on + strand at 919.964 kb on + strand at 919.964 kb on + strand at 919.965 kb on - strand at 920.006 kb on - strand at 920.017 kb on - strand at 920.035 kb on - strand at 920.197 kb on - strand, within ECD_00880 at 920.449 kb on + strand, within ECD_00880 at 920.584 kb on - strand, within ECD_00880 at 920.922 kb on + strand at 921.048 kb on + strand at 921.111 kb on - strand at 921.300 kb on + strand at 921.374 kb on - strand, within ECD_00881 at 921.633 kb on + strand, within ECD_00881
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 919,133 + ECD_00879 0.52 -2.3 919,176 - ECD_00879 0.57 -0.0 919,176 - ECD_00879 0.57 +0.2 919,176 - ECD_00879 0.57 +1.1 919,337 - ECD_00879 0.75 -0.4 919,445 - ECD_00879 0.87 -0.5 919,466 + ECD_00879 0.89 +0.4 919,466 + ECD_00879 0.89 -2.8 919,697 + +1.1 919,710 + +0.4 919,955 + +0.3 919,964 + +0.0 919,964 + -0.6 919,965 - -0.1 920,006 - +0.2 920,017 - -0.3 920,035 - -0.2 920,197 - ECD_00880 0.20 +1.4 920,449 + ECD_00880 0.56 -0.2 920,584 - ECD_00880 0.76 +0.7 920,922 + -0.0 921,048 + -0.8 921,111 - -1.4 921,300 + -1.0 921,374 - ECD_00881 0.12 -0.8 921,633 + ECD_00881 0.28 +0.1
Or see this region's nucleotide sequence