Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00679 and ECD_00680 are separated by 389 nucleotides ECD_00680 and ECD_00681 are separated by 708 nucleotides
ECD_00679: ECD_00679 - putative fimbrial-like adhesin protein, at 710,799 to 711,365
_00679
ECD_00680: ECD_00680 - citrate synthase, at 711,755 to 713,038
_00680
ECD_00681: ECD_00681 - succinate dehydrogenase, membrane subunit, binds cytochrome b556, at 713,747 to 714,136
_00681
Position (kb) 711
712
713
714 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 710.858 kb on + strand, within ECD_00679 at 711.800 kb on - strand at 711.801 kb on + strand at 711.829 kb on + strand at 711.875 kb on - strand at 712.157 kb on - strand, within ECD_00680 at 712.319 kb on - strand, within ECD_00680 at 712.373 kb on - strand, within ECD_00680 at 712.381 kb on + strand, within ECD_00680 at 712.439 kb on - strand, within ECD_00680 at 712.459 kb on - strand, within ECD_00680 at 712.503 kb on + strand, within ECD_00680 at 712.504 kb on - strand, within ECD_00680 at 712.510 kb on - strand, within ECD_00680 at 712.583 kb on - strand, within ECD_00680 at 712.628 kb on - strand, within ECD_00680 at 712.628 kb on - strand, within ECD_00680 at 712.738 kb on - strand, within ECD_00680 at 712.776 kb on + strand, within ECD_00680 at 712.777 kb on - strand, within ECD_00680 at 712.792 kb on - strand, within ECD_00680 at 712.792 kb on - strand, within ECD_00680 at 712.843 kb on + strand, within ECD_00680 at 712.951 kb on + strand at 713.060 kb on - strand at 713.243 kb on - strand at 713.308 kb on - strand at 713.476 kb on + strand at 713.722 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 710,858 + ECD_00679 0.10 -0.4 711,800 - +0.2 711,801 + -1.8 711,829 + -0.7 711,875 - -0.6 712,157 - ECD_00680 0.31 -0.8 712,319 - ECD_00680 0.44 +0.2 712,373 - ECD_00680 0.48 -0.4 712,381 + ECD_00680 0.49 -0.7 712,439 - ECD_00680 0.53 +0.9 712,459 - ECD_00680 0.55 -1.3 712,503 + ECD_00680 0.58 -0.7 712,504 - ECD_00680 0.58 -1.3 712,510 - ECD_00680 0.59 -1.6 712,583 - ECD_00680 0.64 -0.8 712,628 - ECD_00680 0.68 -1.0 712,628 - ECD_00680 0.68 +1.2 712,738 - ECD_00680 0.77 -0.4 712,776 + ECD_00680 0.80 -3.1 712,777 - ECD_00680 0.80 -0.1 712,792 - ECD_00680 0.81 -0.2 712,792 - ECD_00680 0.81 -0.2 712,843 + ECD_00680 0.85 -0.9 712,951 + +1.0 713,060 - +1.1 713,243 - -0.1 713,308 - +1.1 713,476 + -0.1 713,722 + +0.9
Or see this region's nucleotide sequence