Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00575 and ECD_00576 are separated by 120 nucleotides ECD_00576 and ECD_00577 are separated by 220 nucleotides ECD_00577 and ECD_00578 are separated by 230 nucleotides ECD_00578 and ECD_00579 are separated by 229 nucleotides
ECD_00575: ECD_00575 - alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding, at 599,583 to 601,148
_00575
ECD_00576: ECD_00576 - universal stress protein UP12, at 601,269 to 601,697
_00576
ECD_00577: ECD_00577 - putative Zn-dependent NAD(P)-binding oxidoreductase, at 601,918 to 603,156
_00577
ECD_00578: ECD_00578 - regulator of nucleoside diphosphate kinase, at 603,387 to 603,797
_00578
ECD_00579: ECD_00579 - ribonuclease I, at 604,027 to 604,833
_00579
Position (kb) 601
602
603
604 Strain fitness (log2 ratio) -2
-1
0
1 at 601.217 kb on - strand at 601.258 kb on + strand at 601.371 kb on + strand, within ECD_00576 at 601.694 kb on - strand at 601.694 kb on - strand at 601.694 kb on - strand at 601.694 kb on - strand at 601.933 kb on + strand at 601.934 kb on - strand at 602.219 kb on - strand, within ECD_00577 at 602.304 kb on + strand, within ECD_00577 at 602.427 kb on + strand, within ECD_00577 at 602.494 kb on + strand, within ECD_00577 at 602.495 kb on - strand, within ECD_00577 at 602.661 kb on + strand, within ECD_00577 at 602.702 kb on + strand, within ECD_00577 at 602.702 kb on + strand, within ECD_00577 at 602.998 kb on + strand, within ECD_00577 at 602.998 kb on + strand, within ECD_00577 at 603.000 kb on + strand, within ECD_00577 at 603.125 kb on + strand at 603.125 kb on + strand at 603.152 kb on + strand at 603.153 kb on - strand at 603.223 kb on + strand at 603.389 kb on - strand at 603.548 kb on + strand, within ECD_00578 at 603.568 kb on + strand, within ECD_00578 at 603.782 kb on + strand at 603.782 kb on + strand at 603.783 kb on - strand at 603.835 kb on + strand at 603.836 kb on - strand at 603.842 kb on - strand at 603.881 kb on - strand at 603.896 kb on - strand at 603.963 kb on - strand at 603.963 kb on - strand at 603.967 kb on - strand at 603.990 kb on - strand at 604.068 kb on + strand at 604.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 601,217 - -0.1 601,258 + -0.1 601,371 + ECD_00576 0.24 -1.0 601,694 - -0.3 601,694 - +1.6 601,694 - -0.1 601,694 - -0.7 601,933 + +0.1 601,934 - +0.4 602,219 - ECD_00577 0.24 -0.5 602,304 + ECD_00577 0.31 -1.1 602,427 + ECD_00577 0.41 -1.5 602,494 + ECD_00577 0.46 -0.5 602,495 - ECD_00577 0.47 -1.0 602,661 + ECD_00577 0.60 +0.2 602,702 + ECD_00577 0.63 -1.6 602,702 + ECD_00577 0.63 -2.4 602,998 + ECD_00577 0.87 -0.8 602,998 + ECD_00577 0.87 +0.6 603,000 + ECD_00577 0.87 +0.2 603,125 + -0.1 603,125 + -0.1 603,152 + +0.4 603,153 - -2.3 603,223 + +0.1 603,389 - -0.4 603,548 + ECD_00578 0.39 -1.0 603,568 + ECD_00578 0.44 +0.0 603,782 + -0.2 603,782 + +1.7 603,783 - +1.0 603,835 + +1.7 603,836 - +1.7 603,842 - +0.4 603,881 - -1.4 603,896 - +0.2 603,963 - +0.3 603,963 - -0.0 603,967 - +0.5 603,990 - +0.5 604,068 + +0.6 604,069 - -0.9
Or see this region's nucleotide sequence