Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00482 and ECD_00483 are separated by 41 nucleotides ECD_00483 and ECD_00484 are separated by 10 nucleotides ECD_00484 and ECD_00485 are separated by 2 nucleotides
ECD_00482: ECD_00482 - putative outer membrane export usher protein, at 528,784 to 531,393
_00482
ECD_00483: ECD_00483 - FimA-like protein, at 531,435 to 532,412
_00483
ECD_00484: ECD_00484 - FimA-like protein, at 532,423 to 532,938
_00484
ECD_00485: ECD_00485 - response regulator family protein, at 532,941 to 533,573
_00485
Position (kb) 531
532
533 Strain fitness (log2 ratio) -2
-1
0
1 at 530.539 kb on - strand, within ECD_00482 at 530.539 kb on - strand, within ECD_00482 at 530.609 kb on - strand, within ECD_00482 at 530.666 kb on + strand, within ECD_00482 at 530.667 kb on - strand, within ECD_00482 at 530.667 kb on - strand, within ECD_00482 at 530.721 kb on + strand, within ECD_00482 at 530.796 kb on + strand, within ECD_00482 at 530.796 kb on + strand, within ECD_00482 at 530.796 kb on + strand, within ECD_00482 at 530.797 kb on - strand, within ECD_00482 at 530.823 kb on + strand, within ECD_00482 at 531.009 kb on + strand, within ECD_00482 at 531.069 kb on + strand, within ECD_00482 at 531.915 kb on + strand, within ECD_00483 at 531.959 kb on + strand, within ECD_00483 at 531.959 kb on + strand, within ECD_00483 at 532.274 kb on + strand, within ECD_00483 at 532.493 kb on + strand, within ECD_00484 at 532.547 kb on + strand, within ECD_00484 at 532.604 kb on + strand, within ECD_00484 at 532.865 kb on - strand, within ECD_00484
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 530,539 - ECD_00482 0.67 +0.2 530,539 - ECD_00482 0.67 -2.7 530,609 - ECD_00482 0.70 +0.3 530,666 + ECD_00482 0.72 +1.0 530,667 - ECD_00482 0.72 -0.4 530,667 - ECD_00482 0.72 +0.8 530,721 + ECD_00482 0.74 +0.1 530,796 + ECD_00482 0.77 -0.7 530,796 + ECD_00482 0.77 -0.3 530,796 + ECD_00482 0.77 +0.0 530,797 - ECD_00482 0.77 +1.1 530,823 + ECD_00482 0.78 -2.4 531,009 + ECD_00482 0.85 -1.5 531,069 + ECD_00482 0.88 +0.0 531,915 + ECD_00483 0.49 -0.9 531,959 + ECD_00483 0.54 -0.6 531,959 + ECD_00483 0.54 -1.3 532,274 + ECD_00483 0.86 +0.0 532,493 + ECD_00484 0.14 +0.5 532,547 + ECD_00484 0.24 +0.4 532,604 + ECD_00484 0.35 -1.1 532,865 - ECD_00484 0.86 -0.5
Or see this region's nucleotide sequence