Strain Fitness in Escherichia coli BL21 around ECD_00233

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00232 and ECD_00233 are separated by 260 nucleotidesECD_00233 and ECD_00234 are separated by 91 nucleotides ECD_00232: ECD_00232 - aminoacyl-histidine dipeptidase (peptidase D), at 258,753 to 260,210 _00232 ECD_00233: ECD_00233 - xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase, at 260,471 to 260,929 _00233 ECD_00234: ECD_00234 - fermentation-respiration switch protein; PTS Enzyme IIA(Glc)-binding protein; pNP-butyrate esterase activity, at 261,021 to 262,265 _00234 Position (kb) 260 261Strain fitness (log2 ratio) -2 -1 0 1at 259.579 kb on - strand, within ECD_00232at 259.587 kb on + strand, within ECD_00232at 259.594 kb on - strand, within ECD_00232at 259.681 kb on + strand, within ECD_00232at 259.682 kb on - strand, within ECD_00232at 259.853 kb on + strand, within ECD_00232at 259.913 kb on + strand, within ECD_00232at 259.913 kb on + strand, within ECD_00232at 259.913 kb on + strand, within ECD_00232at 259.914 kb on - strand, within ECD_00232at 259.914 kb on - strand, within ECD_00232at 259.914 kb on - strand, within ECD_00232at 259.914 kb on - strand, within ECD_00232at 259.915 kb on + strand, within ECD_00232at 259.916 kb on - strand, within ECD_00232at 259.916 kb on - strand, within ECD_00232at 259.916 kb on - strand, within ECD_00232at 260.037 kb on - strand, within ECD_00232at 260.051 kb on + strand, within ECD_00232at 260.052 kb on - strand, within ECD_00232at 260.052 kb on - strand, within ECD_00232at 260.056 kb on - strand, within ECD_00232at 260.107 kb on + strandat 260.108 kb on - strandat 260.131 kb on + strandat 260.147 kb on + strandat 260.148 kb on - strandat 260.148 kb on - strandat 260.191 kb on - strandat 260.213 kb on + strandat 260.213 kb on + strandat 260.302 kb on - strandat 260.302 kb on - strandat 260.314 kb on - strandat 260.314 kb on - strandat 260.400 kb on - strandat 260.400 kb on - strandat 260.401 kb on + strandat 260.450 kb on - strandat 260.648 kb on - strand, within ECD_00233at 260.657 kb on + strand, within ECD_00233at 260.658 kb on - strand, within ECD_00233at 260.683 kb on + strand, within ECD_00233at 260.755 kb on + strand, within ECD_00233at 260.843 kb on + strand, within ECD_00233at 260.843 kb on + strand, within ECD_00233at 260.969 kb on - strandat 260.983 kb on + strandat 260.989 kb on - strandat 260.989 kb on - strandat 261.003 kb on - strandat 261.003 kb on - strandat 261.144 kb on - strandat 261.236 kb on + strand, within ECD_00234at 261.236 kb on + strand, within ECD_00234at 261.237 kb on - strand, within ECD_00234at 261.237 kb on - strand, within ECD_00234at 261.237 kb on - strand, within ECD_00234at 261.274 kb on + strand, within ECD_00234at 261.276 kb on + strand, within ECD_00234at 261.282 kb on - strand, within ECD_00234at 261.315 kb on + strand, within ECD_00234at 261.316 kb on - strand, within ECD_00234at 261.407 kb on + strand, within ECD_00234at 261.414 kb on + strand, within ECD_00234at 261.613 kb on + strand, within ECD_00234at 261.649 kb on - strand, within ECD_00234at 261.651 kb on + strand, within ECD_00234at 261.651 kb on + strand, within ECD_00234at 261.669 kb on + strand, within ECD_00234at 261.702 kb on - strand, within ECD_00234at 261.707 kb on + strand, within ECD_00234at 261.779 kb on - strand, within ECD_00234at 261.796 kb on + strand, within ECD_00234at 261.848 kb on + strand, within ECD_00234

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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259,579 - ECD_00232 0.57 -0.4
259,587 + ECD_00232 0.57 -0.6
259,594 - ECD_00232 0.58 +0.0
259,681 + ECD_00232 0.64 +1.1
259,682 - ECD_00232 0.64 -0.1
259,853 + ECD_00232 0.75 -0.7
259,913 + ECD_00232 0.80 +1.6
259,913 + ECD_00232 0.80 +0.4
259,913 + ECD_00232 0.80 +0.6
259,914 - ECD_00232 0.80 +1.0
259,914 - ECD_00232 0.80 -0.2
259,914 - ECD_00232 0.80 +0.1
259,914 - ECD_00232 0.80 -1.3
259,915 + ECD_00232 0.80 +0.0
259,916 - ECD_00232 0.80 +0.2
259,916 - ECD_00232 0.80 +0.7
259,916 - ECD_00232 0.80 -0.2
260,037 - ECD_00232 0.88 +0.1
260,051 + ECD_00232 0.89 -1.2
260,052 - ECD_00232 0.89 +1.4
260,052 - ECD_00232 0.89 +0.2
260,056 - ECD_00232 0.89 -0.8
260,107 + -0.5
260,108 - -1.5
260,131 + -1.1
260,147 + -0.2
260,148 - -0.5
260,148 - -0.5
260,191 - -0.1
260,213 + -0.6
260,213 + -0.2
260,302 - -0.2
260,302 - +0.2
260,314 - -0.3
260,314 - -0.1
260,400 - -0.3
260,400 - -1.7
260,401 + +1.0
260,450 - +0.6
260,648 - ECD_00233 0.39 +0.2
260,657 + ECD_00233 0.41 +0.3
260,658 - ECD_00233 0.41 -1.2
260,683 + ECD_00233 0.46 -1.2
260,755 + ECD_00233 0.62 -1.6
260,843 + ECD_00233 0.81 +0.1
260,843 + ECD_00233 0.81 -1.5
260,969 - +1.0
260,983 + -1.0
260,989 - -1.0
260,989 - +0.5
261,003 - -0.4
261,003 - +0.2
261,144 - +1.4
261,236 + ECD_00234 0.17 +0.5
261,236 + ECD_00234 0.17 +0.5
261,237 - ECD_00234 0.17 +0.4
261,237 - ECD_00234 0.17 -0.6
261,237 - ECD_00234 0.17 +0.5
261,274 + ECD_00234 0.20 +0.6
261,276 + ECD_00234 0.20 -2.1
261,282 - ECD_00234 0.21 +0.4
261,315 + ECD_00234 0.24 +0.4
261,316 - ECD_00234 0.24 -0.5
261,407 + ECD_00234 0.31 -0.8
261,414 + ECD_00234 0.32 -0.7
261,613 + ECD_00234 0.48 +0.1
261,649 - ECD_00234 0.50 +0.6
261,651 + ECD_00234 0.51 +0.1
261,651 + ECD_00234 0.51 -0.2
261,669 + ECD_00234 0.52 +0.7
261,702 - ECD_00234 0.55 -1.0
261,707 + ECD_00234 0.55 -1.1
261,779 - ECD_00234 0.61 +0.4
261,796 + ECD_00234 0.62 +1.4
261,848 + ECD_00234 0.66 -0.3

Or see this region's nucleotide sequence