Strain Fitness in Escherichia coli BL21 around ECD_04203

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04202 and ECD_04392 are separated by 64 nucleotidesECD_04392 and ECD_04203 overlap by 4 nucleotidesECD_04203 and ECD_04204 are separated by 9 nucleotides ECD_04202: ECD_04202 - SdiA-regulated family putative membrane-anchored protein; putative phytase-like esterase, at 4,472,022 to 4,472,882 _04202 ECD_04392: ECD_04392 - uncharacterized protein, at 4,472,947 to 4,473,204 _04392 ECD_04203: ECD_04203 - putative ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase, at 4,473,201 to 4,473,968 _04203 ECD_04204: ECD_04204 - putative 2-hydroxyglutaryl-CoA dehydratase, at 4,473,978 to 4,475,129 _04204 Position (kb) 4473 4474Strain fitness (log2 ratio) -3 -2 -1 0 1at 4472.250 kb on - strand, within ECD_04202at 4472.292 kb on + strand, within ECD_04202at 4472.328 kb on - strand, within ECD_04202at 4472.332 kb on - strand, within ECD_04202at 4472.375 kb on + strand, within ECD_04202at 4472.510 kb on - strand, within ECD_04202at 4472.561 kb on - strand, within ECD_04202at 4472.663 kb on + strand, within ECD_04202at 4472.663 kb on + strand, within ECD_04202at 4472.672 kb on + strand, within ECD_04202at 4472.673 kb on - strand, within ECD_04202at 4472.705 kb on + strand, within ECD_04202at 4472.708 kb on + strand, within ECD_04202at 4472.810 kb on + strandat 4472.895 kb on - strandat 4472.907 kb on + strandat 4472.922 kb on + strandat 4472.925 kb on - strandat 4472.925 kb on - strandat 4473.040 kb on + strand, within ECD_04392at 4473.041 kb on - strand, within ECD_04392at 4473.494 kb on + strand, within ECD_04203at 4473.494 kb on + strand, within ECD_04203at 4473.495 kb on - strand, within ECD_04203at 4473.495 kb on - strand, within ECD_04203at 4473.495 kb on - strand, within ECD_04203at 4473.816 kb on + strand, within ECD_04203at 4473.916 kb on - strandat 4473.961 kb on + strandat 4473.979 kb on + strandat 4473.980 kb on - strandat 4474.039 kb on + strandat 4474.058 kb on + strandat 4474.059 kb on - strandat 4474.060 kb on + strandat 4474.060 kb on + strandat 4474.060 kb on + strandat 4474.118 kb on - strand, within ECD_04204at 4474.149 kb on + strand, within ECD_04204at 4474.150 kb on - strand, within ECD_04204at 4474.150 kb on - strand, within ECD_04204at 4474.240 kb on + strand, within ECD_04204at 4474.244 kb on + strand, within ECD_04204at 4474.261 kb on + strand, within ECD_04204at 4474.262 kb on - strand, within ECD_04204at 4474.520 kb on - strand, within ECD_04204at 4474.563 kb on + strand, within ECD_04204at 4474.564 kb on - strand, within ECD_04204at 4474.780 kb on + strand, within ECD_04204at 4474.780 kb on + strand, within ECD_04204at 4474.781 kb on - strand, within ECD_04204at 4474.781 kb on - strand, within ECD_04204at 4474.781 kb on - strand, within ECD_04204at 4474.840 kb on + strand, within ECD_04204at 4474.886 kb on + strand, within ECD_04204

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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4,472,250 - ECD_04202 0.26 -0.1
4,472,292 + ECD_04202 0.31 -0.2
4,472,328 - ECD_04202 0.36 -0.1
4,472,332 - ECD_04202 0.36 +0.0
4,472,375 + ECD_04202 0.41 -1.0
4,472,510 - ECD_04202 0.57 +0.7
4,472,561 - ECD_04202 0.63 -0.4
4,472,663 + ECD_04202 0.74 -0.7
4,472,663 + ECD_04202 0.74 +0.3
4,472,672 + ECD_04202 0.75 +0.6
4,472,673 - ECD_04202 0.76 -1.4
4,472,705 + ECD_04202 0.79 +0.6
4,472,708 + ECD_04202 0.80 +0.7
4,472,810 + +1.0
4,472,895 - +0.2
4,472,907 + +1.0
4,472,922 + -0.7
4,472,925 - -2.0
4,472,925 - +0.2
4,473,040 + ECD_04392 0.36 -0.3
4,473,041 - ECD_04392 0.36 +0.1
4,473,494 + ECD_04203 0.38 -0.1
4,473,494 + ECD_04203 0.38 +1.3
4,473,495 - ECD_04203 0.38 -0.8
4,473,495 - ECD_04203 0.38 +0.6
4,473,495 - ECD_04203 0.38 +0.5
4,473,816 + ECD_04203 0.80 -0.7
4,473,916 - +0.4
4,473,961 + +0.3
4,473,979 + -1.9
4,473,980 - +0.0
4,474,039 + -0.1
4,474,058 + -0.2
4,474,059 - -0.1
4,474,060 + +0.9
4,474,060 + +0.2
4,474,060 + +0.1
4,474,118 - ECD_04204 0.12 -0.9
4,474,149 + ECD_04204 0.15 +0.9
4,474,150 - ECD_04204 0.15 +0.5
4,474,150 - ECD_04204 0.15 -1.0
4,474,240 + ECD_04204 0.23 +0.3
4,474,244 + ECD_04204 0.23 +1.0
4,474,261 + ECD_04204 0.25 +0.4
4,474,262 - ECD_04204 0.25 -0.7
4,474,520 - ECD_04204 0.47 -2.8
4,474,563 + ECD_04204 0.51 -0.6
4,474,564 - ECD_04204 0.51 -1.1
4,474,780 + ECD_04204 0.70 +0.0
4,474,780 + ECD_04204 0.70 -0.5
4,474,781 - ECD_04204 0.70 +0.6
4,474,781 - ECD_04204 0.70 +0.1
4,474,781 - ECD_04204 0.70 -0.1
4,474,840 + ECD_04204 0.75 -0.1
4,474,886 + ECD_04204 0.79 -0.7

Or see this region's nucleotide sequence