Strain Fitness in Escherichia coli BL21 around ECD_04194

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04193 and ECD_04194 are separated by 140 nucleotidesECD_04194 and ECD_04195 are separated by 672 nucleotides ECD_04193: ECD_04193 - fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor, at 4,463,855 to 4,464,628 _04193 ECD_04194: ECD_04194 - uncharacterized protein, at 4,464,769 to 4,465,599 _04194 ECD_04195: ECD_04195 - RpoS stabilzer after DNA damage, anti-RssB factor, at 4,466,272 to 4,466,664 _04195 Position (kb) 4464 4465 4466Strain fitness (log2 ratio) -2 -1 0 1 2at 4464.068 kb on + strand, within ECD_04193at 4464.068 kb on + strand, within ECD_04193at 4464.069 kb on - strand, within ECD_04193at 4464.882 kb on + strand, within ECD_04194at 4464.974 kb on - strand, within ECD_04194at 4465.108 kb on + strand, within ECD_04194at 4466.170 kb on + strandat 4466.170 kb on + strandat 4466.171 kb on - strandat 4466.210 kb on + strandat 4466.243 kb on + strandat 4466.244 kb on - strandat 4466.244 kb on - strandat 4466.319 kb on + strand, within ECD_04195at 4466.371 kb on - strand, within ECD_04195at 4466.399 kb on + strand, within ECD_04195at 4466.400 kb on - strand, within ECD_04195at 4466.493 kb on - strand, within ECD_04195at 4466.581 kb on + strand, within ECD_04195

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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4,464,068 + ECD_04193 0.28 +2.2
4,464,068 + ECD_04193 0.28 -1.2
4,464,069 - ECD_04193 0.28 -0.7
4,464,882 + ECD_04194 0.14 -0.4
4,464,974 - ECD_04194 0.25 +1.5
4,465,108 + ECD_04194 0.41 +0.3
4,466,170 + -1.3
4,466,170 + +0.7
4,466,171 - -0.1
4,466,210 + +1.3
4,466,243 + -0.1
4,466,244 - +0.1
4,466,244 - +0.3
4,466,319 + ECD_04195 0.12 -0.7
4,466,371 - ECD_04195 0.25 -2.1
4,466,399 + ECD_04195 0.32 -0.3
4,466,400 - ECD_04195 0.33 -1.0
4,466,493 - ECD_04195 0.56 -0.5
4,466,581 + ECD_04195 0.79 -0.5

Or see this region's nucleotide sequence