Strain Fitness in Escherichia coli BL21 around ECD_04084

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04083 and ECD_04084 are separated by 88 nucleotidesECD_04084 and ECD_04085 are separated by 122 nucleotides ECD_04083: ECD_04083 - NAD(P)H:quinone oxidoreductase, at 4,346,529 to 4,347,389 _04083 ECD_04084: ECD_04084 - DUF24 family HxlR-type putative transcriptional regulator, at 4,347,478 to 4,347,858 _04084 ECD_04085: ECD_04085 - 2':3'-cyclic-nucleotide 2'-phosphodiesterase, at 4,347,981 to 4,349,924 _04085 Position (kb) 4347 4348Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4346.527 kb on - strandat 4346.531 kb on - strandat 4346.663 kb on + strand, within ECD_04083at 4346.738 kb on + strand, within ECD_04083at 4346.739 kb on - strand, within ECD_04083at 4346.739 kb on - strand, within ECD_04083at 4346.923 kb on - strand, within ECD_04083at 4346.971 kb on + strand, within ECD_04083at 4346.971 kb on + strand, within ECD_04083at 4346.996 kb on - strand, within ECD_04083at 4347.086 kb on + strand, within ECD_04083at 4347.088 kb on + strand, within ECD_04083at 4347.128 kb on + strand, within ECD_04083at 4347.134 kb on + strand, within ECD_04083at 4347.134 kb on + strand, within ECD_04083at 4347.233 kb on - strand, within ECD_04083at 4347.300 kb on - strand, within ECD_04083at 4347.306 kb on + strandat 4347.307 kb on - strandat 4347.341 kb on + strandat 4347.341 kb on + strandat 4347.342 kb on - strandat 4347.349 kb on + strandat 4347.349 kb on + strandat 4347.349 kb on + strandat 4347.350 kb on - strandat 4347.350 kb on - strandat 4347.350 kb on - strandat 4347.350 kb on - strandat 4347.350 kb on - strandat 4347.419 kb on + strandat 4347.423 kb on + strandat 4347.424 kb on - strandat 4347.468 kb on + strandat 4347.609 kb on + strand, within ECD_04084at 4347.610 kb on - strand, within ECD_04084at 4347.686 kb on + strand, within ECD_04084at 4347.745 kb on + strand, within ECD_04084at 4347.856 kb on + strandat 4347.898 kb on + strandat 4347.960 kb on - strandat 4347.980 kb on - strandat 4347.980 kb on - strandat 4347.982 kb on + strandat 4347.982 kb on + strandat 4347.983 kb on - strandat 4348.003 kb on + strandat 4348.049 kb on - strandat 4348.082 kb on + strandat 4348.155 kb on - strandat 4348.294 kb on + strand, within ECD_04085at 4348.294 kb on + strand, within ECD_04085at 4348.298 kb on + strand, within ECD_04085at 4348.361 kb on + strand, within ECD_04085at 4348.465 kb on + strand, within ECD_04085at 4348.465 kb on + strand, within ECD_04085at 4348.599 kb on - strand, within ECD_04085at 4348.607 kb on - strand, within ECD_04085at 4348.663 kb on + strand, within ECD_04085at 4348.663 kb on + strand, within ECD_04085at 4348.664 kb on - strand, within ECD_04085at 4348.756 kb on + strand, within ECD_04085at 4348.757 kb on - strand, within ECD_04085at 4348.768 kb on + strand, within ECD_04085at 4348.829 kb on - strand, within ECD_04085at 4348.829 kb on - strand, within ECD_04085at 4348.829 kb on - strand, within ECD_04085at 4348.829 kb on - strand, within ECD_04085at 4348.829 kb on - strand, within ECD_04085at 4348.832 kb on + strand, within ECD_04085at 4348.832 kb on + strand, within ECD_04085at 4348.833 kb on - strand, within ECD_04085at 4348.833 kb on - strand, within ECD_04085at 4348.833 kb on - strand, within ECD_04085at 4348.833 kb on - strand, within ECD_04085at 4348.833 kb on - strand, within ECD_04085at 4348.833 kb on - strand, within ECD_04085at 4348.833 kb on - strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.838 kb on + strand, within ECD_04085at 4348.838 kb on + strand, within ECD_04085at 4348.838 kb on + strand, within ECD_04085at 4348.838 kb on + strand, within ECD_04085at 4348.839 kb on - strand, within ECD_04085at 4348.839 kb on - strand, within ECD_04085at 4348.839 kb on - strand, within ECD_04085

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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4,346,527 - +1.0
4,346,531 - -0.8
4,346,663 + ECD_04083 0.16 +0.7
4,346,738 + ECD_04083 0.24 +0.7
4,346,739 - ECD_04083 0.24 -0.4
4,346,739 - ECD_04083 0.24 -0.3
4,346,923 - ECD_04083 0.46 +0.4
4,346,971 + ECD_04083 0.51 +0.6
4,346,971 + ECD_04083 0.51 -1.4
4,346,996 - ECD_04083 0.54 -0.4
4,347,086 + ECD_04083 0.65 +0.2
4,347,088 + ECD_04083 0.65 +0.2
4,347,128 + ECD_04083 0.70 -0.7
4,347,134 + ECD_04083 0.70 -0.1
4,347,134 + ECD_04083 0.70 -0.3
4,347,233 - ECD_04083 0.82 -0.4
4,347,300 - ECD_04083 0.90 -1.1
4,347,306 + +0.2
4,347,307 - -0.3
4,347,341 + -0.3
4,347,341 + -0.3
4,347,342 - -0.7
4,347,349 + +0.0
4,347,349 + -0.7
4,347,349 + -0.7
4,347,350 - -1.4
4,347,350 - -0.1
4,347,350 - +1.0
4,347,350 - -0.6
4,347,350 - +0.0
4,347,419 + -0.1
4,347,423 + -1.5
4,347,424 - -2.7
4,347,468 + +0.3
4,347,609 + ECD_04084 0.34 -0.4
4,347,610 - ECD_04084 0.35 -0.3
4,347,686 + ECD_04084 0.55 -0.5
4,347,745 + ECD_04084 0.70 -0.3
4,347,856 + -0.4
4,347,898 + -0.5
4,347,960 - -0.1
4,347,980 - +0.4
4,347,980 - +0.7
4,347,982 + +0.0
4,347,982 + -0.2
4,347,983 - +0.6
4,348,003 + +3.0
4,348,049 - +0.2
4,348,082 + +1.1
4,348,155 - -0.9
4,348,294 + ECD_04085 0.16 -0.8
4,348,294 + ECD_04085 0.16 -0.0
4,348,298 + ECD_04085 0.16 +1.1
4,348,361 + ECD_04085 0.20 -0.3
4,348,465 + ECD_04085 0.25 +0.2
4,348,465 + ECD_04085 0.25 +0.8
4,348,599 - ECD_04085 0.32 -3.4
4,348,607 - ECD_04085 0.32 +1.0
4,348,663 + ECD_04085 0.35 -0.3
4,348,663 + ECD_04085 0.35 -1.1
4,348,664 - ECD_04085 0.35 +0.5
4,348,756 + ECD_04085 0.40 +0.3
4,348,757 - ECD_04085 0.40 -0.9
4,348,768 + ECD_04085 0.40 +0.4
4,348,829 - ECD_04085 0.44 -0.7
4,348,829 - ECD_04085 0.44 -2.2
4,348,829 - ECD_04085 0.44 -0.1
4,348,829 - ECD_04085 0.44 +0.3
4,348,829 - ECD_04085 0.44 +0.0
4,348,832 + ECD_04085 0.44 -0.8
4,348,832 + ECD_04085 0.44 +0.2
4,348,833 - ECD_04085 0.44 -0.2
4,348,833 - ECD_04085 0.44 +1.5
4,348,833 - ECD_04085 0.44 +1.1
4,348,833 - ECD_04085 0.44 -1.7
4,348,833 - ECD_04085 0.44 +1.2
4,348,833 - ECD_04085 0.44 +0.8
4,348,833 - ECD_04085 0.44 +1.9
4,348,834 + ECD_04085 0.44 +0.1
4,348,834 + ECD_04085 0.44 +0.5
4,348,834 + ECD_04085 0.44 +0.7
4,348,834 + ECD_04085 0.44 +0.0
4,348,834 + ECD_04085 0.44 +0.1
4,348,834 + ECD_04085 0.44 -0.2
4,348,834 + ECD_04085 0.44 +0.2
4,348,834 + ECD_04085 0.44 -1.3
4,348,834 + ECD_04085 0.44 +2.5
4,348,834 + ECD_04085 0.44 +0.3
4,348,834 + ECD_04085 0.44 -1.2
4,348,835 - ECD_04085 0.44 +0.8
4,348,835 - ECD_04085 0.44 +1.0
4,348,835 - ECD_04085 0.44 -0.0
4,348,835 - ECD_04085 0.44 -0.5
4,348,835 - ECD_04085 0.44 -0.9
4,348,835 - ECD_04085 0.44 +0.6
4,348,835 - ECD_04085 0.44 -0.6
4,348,835 - ECD_04085 0.44 -0.0
4,348,835 - ECD_04085 0.44 -0.3
4,348,835 - ECD_04085 0.44 +0.3
4,348,835 - ECD_04085 0.44 +1.7
4,348,835 - ECD_04085 0.44 +0.0
4,348,835 - ECD_04085 0.44 -0.4
4,348,835 - ECD_04085 0.44 +0.3
4,348,835 - ECD_04085 0.44 -0.1
4,348,835 - ECD_04085 0.44 +0.1
4,348,835 - ECD_04085 0.44 +0.2
4,348,835 - ECD_04085 0.44 -1.2
4,348,835 - ECD_04085 0.44 +0.1
4,348,835 - ECD_04085 0.44 +0.1
4,348,835 - ECD_04085 0.44 +0.6
4,348,835 - ECD_04085 0.44 -1.4
4,348,835 - ECD_04085 0.44 -2.8
4,348,835 - ECD_04085 0.44 +1.1
4,348,835 - ECD_04085 0.44 +0.5
4,348,835 - ECD_04085 0.44 +0.5
4,348,838 + ECD_04085 0.44 +0.9
4,348,838 + ECD_04085 0.44 +0.6
4,348,838 + ECD_04085 0.44 -0.4
4,348,838 + ECD_04085 0.44 -0.8
4,348,839 - ECD_04085 0.44 +0.6
4,348,839 - ECD_04085 0.44 -0.2
4,348,839 - ECD_04085 0.44 -0.5

Or see this region's nucleotide sequence