Strain Fitness in Escherichia coli BL21 around ECD_03979

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03978 and ECD_03979 are separated by 557 nucleotidesECD_03979 and ECD_03980 are separated by 400 nucleotides ECD_03978: ECD_03978 - metalloprotein superfamily protein, at 4,232,477 to 4,232,920 _03978 ECD_03979: ECD_03979 - zinc-ribbon family protein, at 4,233,478 to 4,233,813 _03979 ECD_03980: ECD_03980 - clamp-binding sister replication fork colocalization protein, dynamin-related, at 4,234,214 to 4,236,442 _03980 Position (kb) 4233 4234Strain fitness (log2 ratio) -2 -1 0 1 2at 4232.670 kb on + strand, within ECD_03978at 4232.830 kb on + strand, within ECD_03978at 4232.854 kb on + strand, within ECD_03978at 4232.855 kb on - strand, within ECD_03978at 4232.855 kb on - strand, within ECD_03978at 4232.855 kb on - strand, within ECD_03978at 4232.862 kb on + strand, within ECD_03978at 4232.904 kb on + strandat 4232.905 kb on - strandat 4232.937 kb on - strandat 4232.957 kb on - strandat 4233.044 kb on - strandat 4233.244 kb on - strandat 4233.391 kb on + strandat 4233.473 kb on + strandat 4233.610 kb on - strand, within ECD_03979at 4233.630 kb on + strand, within ECD_03979at 4233.640 kb on - strand, within ECD_03979at 4233.681 kb on + strand, within ECD_03979at 4233.752 kb on + strand, within ECD_03979at 4233.752 kb on + strand, within ECD_03979at 4233.753 kb on - strand, within ECD_03979at 4233.753 kb on - strand, within ECD_03979at 4233.753 kb on - strand, within ECD_03979at 4233.762 kb on + strand, within ECD_03979at 4233.777 kb on - strand, within ECD_03979at 4233.777 kb on - strand, within ECD_03979at 4233.806 kb on - strandat 4233.883 kb on + strandat 4233.884 kb on - strandat 4234.217 kb on + strandat 4234.218 kb on - strandat 4234.264 kb on - strandat 4234.645 kb on + strand, within ECD_03980at 4234.646 kb on - strand, within ECD_03980at 4234.672 kb on - strand, within ECD_03980at 4234.681 kb on + strand, within ECD_03980

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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4,232,670 + ECD_03978 0.43 -0.3
4,232,830 + ECD_03978 0.80 -0.1
4,232,854 + ECD_03978 0.85 -0.3
4,232,855 - ECD_03978 0.85 -0.8
4,232,855 - ECD_03978 0.85 -0.1
4,232,855 - ECD_03978 0.85 +0.3
4,232,862 + ECD_03978 0.87 -1.1
4,232,904 + -2.4
4,232,905 - +0.9
4,232,937 - +1.3
4,232,957 - -0.4
4,233,044 - -0.6
4,233,244 - -0.9
4,233,391 + +1.9
4,233,473 + +0.1
4,233,610 - ECD_03979 0.39 +1.2
4,233,630 + ECD_03979 0.45 +0.7
4,233,640 - ECD_03979 0.48 +0.4
4,233,681 + ECD_03979 0.60 -0.7
4,233,752 + ECD_03979 0.82 +0.8
4,233,752 + ECD_03979 0.82 +0.7
4,233,753 - ECD_03979 0.82 +0.1
4,233,753 - ECD_03979 0.82 +0.4
4,233,753 - ECD_03979 0.82 -0.3
4,233,762 + ECD_03979 0.85 +0.8
4,233,777 - ECD_03979 0.89 +0.0
4,233,777 - ECD_03979 0.89 -1.0
4,233,806 - -0.4
4,233,883 + +1.1
4,233,884 - -1.5
4,234,217 + +0.4
4,234,218 - -0.5
4,234,264 - +0.1
4,234,645 + ECD_03980 0.19 -1.0
4,234,646 - ECD_03980 0.19 -0.2
4,234,672 - ECD_03980 0.21 -1.1
4,234,681 + ECD_03980 0.21 +0.7

Or see this region's nucleotide sequence