Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03961 and ECD_03962 are separated by 358 nucleotides ECD_03962 and ECD_03963 are separated by 68 nucleotides ECD_03963 and ECD_03964 are separated by 146 nucleotides
ECD_03961: ECD_03961 - d-allose-inducible als operon transcriptional repressor; autorepressor; repressor of rpiR, at 4,219,288 to 4,220,178
_03961
ECD_03962: ECD_03962 - ribose 5-phosphate isomerase B/allose 6-phosphate isomerase, at 4,220,537 to 4,220,986
_03962
ECD_03963: ECD_03963 - putative periplasmic protein, at 4,221,055 to 4,221,384
_03963
ECD_03964: ECD_03964 - 5-phospho-alpha-D-ribosyl 1,2-cyclic phosphate phosphodiesterase, at 4,221,531 to 4,222,289
_03964
Position (kb) 4220
4221 Strain fitness (log2 ratio) -1
0
1
2 at 4219.568 kb on - strand, within ECD_03961 at 4219.598 kb on - strand, within ECD_03961 at 4219.676 kb on - strand, within ECD_03961 at 4219.703 kb on - strand, within ECD_03961 at 4219.717 kb on - strand, within ECD_03961 at 4219.832 kb on - strand, within ECD_03961 at 4219.843 kb on - strand, within ECD_03961 at 4219.843 kb on - strand, within ECD_03961 at 4219.843 kb on - strand, within ECD_03961 at 4219.847 kb on - strand, within ECD_03961 at 4219.847 kb on - strand, within ECD_03961 at 4219.852 kb on - strand, within ECD_03961 at 4219.901 kb on - strand, within ECD_03961 at 4219.901 kb on - strand, within ECD_03961 at 4219.923 kb on - strand, within ECD_03961 at 4219.943 kb on - strand, within ECD_03961 at 4219.943 kb on - strand, within ECD_03961 at 4219.943 kb on - strand, within ECD_03961 at 4219.983 kb on + strand, within ECD_03961 at 4219.983 kb on + strand, within ECD_03961 at 4219.984 kb on - strand, within ECD_03961 at 4219.984 kb on - strand, within ECD_03961 at 4220.028 kb on + strand, within ECD_03961 at 4220.029 kb on - strand, within ECD_03961 at 4220.029 kb on - strand, within ECD_03961 at 4220.029 kb on - strand, within ECD_03961 at 4220.124 kb on - strand at 4220.138 kb on - strand at 4220.138 kb on - strand at 4220.138 kb on - strand at 4220.138 kb on - strand at 4220.138 kb on - strand at 4220.140 kb on - strand at 4220.212 kb on + strand at 4220.213 kb on - strand at 4220.213 kb on - strand at 4220.214 kb on + strand at 4220.215 kb on - strand at 4220.374 kb on + strand at 4220.452 kb on + strand at 4220.453 kb on - strand at 4220.592 kb on + strand, within ECD_03962 at 4220.807 kb on + strand, within ECD_03962 at 4220.808 kb on - strand, within ECD_03962 at 4220.834 kb on - strand, within ECD_03962 at 4220.921 kb on + strand, within ECD_03962 at 4220.921 kb on + strand, within ECD_03962 at 4220.968 kb on - strand at 4220.998 kb on + strand at 4220.999 kb on - strand at 4221.022 kb on - strand at 4221.022 kb on - strand at 4221.031 kb on - strand at 4221.162 kb on + strand, within ECD_03963 at 4221.173 kb on - strand, within ECD_03963 at 4221.173 kb on - strand, within ECD_03963 at 4221.173 kb on - strand, within ECD_03963 at 4221.173 kb on - strand, within ECD_03963 at 4221.257 kb on - strand, within ECD_03963 at 4221.374 kb on - strand at 4221.374 kb on - strand at 4221.624 kb on - strand, within ECD_03964
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 4,219,568 - ECD_03961 0.31 -0.4 4,219,598 - ECD_03961 0.35 +0.1 4,219,676 - ECD_03961 0.44 -0.2 4,219,703 - ECD_03961 0.47 +0.5 4,219,717 - ECD_03961 0.48 +0.2 4,219,832 - ECD_03961 0.61 +0.4 4,219,843 - ECD_03961 0.62 -0.1 4,219,843 - ECD_03961 0.62 +2.2 4,219,843 - ECD_03961 0.62 -1.6 4,219,847 - ECD_03961 0.63 -1.6 4,219,847 - ECD_03961 0.63 -1.0 4,219,852 - ECD_03961 0.63 +0.2 4,219,901 - ECD_03961 0.69 +0.4 4,219,901 - ECD_03961 0.69 +1.3 4,219,923 - ECD_03961 0.71 -0.1 4,219,943 - ECD_03961 0.74 -0.6 4,219,943 - ECD_03961 0.74 +0.4 4,219,943 - ECD_03961 0.74 -0.4 4,219,983 + ECD_03961 0.78 +1.1 4,219,983 + ECD_03961 0.78 +0.8 4,219,984 - ECD_03961 0.78 -0.0 4,219,984 - ECD_03961 0.78 -0.1 4,220,028 + ECD_03961 0.83 -0.2 4,220,029 - ECD_03961 0.83 -0.2 4,220,029 - ECD_03961 0.83 +0.3 4,220,029 - ECD_03961 0.83 -0.8 4,220,124 - -0.2 4,220,138 - +0.3 4,220,138 - +0.9 4,220,138 - -0.1 4,220,138 - -0.4 4,220,138 - +0.2 4,220,140 - -0.3 4,220,212 + -0.0 4,220,213 - -0.6 4,220,213 - -0.6 4,220,214 + -0.8 4,220,215 - +0.4 4,220,374 + +1.1 4,220,452 + +0.9 4,220,453 - +1.1 4,220,592 + ECD_03962 0.12 +0.7 4,220,807 + ECD_03962 0.60 +1.0 4,220,808 - ECD_03962 0.60 +0.0 4,220,834 - ECD_03962 0.66 -0.2 4,220,921 + ECD_03962 0.85 +0.2 4,220,921 + ECD_03962 0.85 +0.6 4,220,968 - +1.1 4,220,998 + +0.7 4,220,999 - +1.3 4,221,022 - -1.5 4,221,022 - -0.5 4,221,031 - +0.3 4,221,162 + ECD_03963 0.32 -0.5 4,221,173 - ECD_03963 0.36 -0.5 4,221,173 - ECD_03963 0.36 -0.6 4,221,173 - ECD_03963 0.36 +0.2 4,221,173 - ECD_03963 0.36 +0.5 4,221,257 - ECD_03963 0.61 -1.1 4,221,374 - -0.3 4,221,374 - -1.1 4,221,624 - ECD_03964 0.12 +0.0
Or see this region's nucleotide sequence