Strain Fitness in Escherichia coli BL21 around ECD_03319

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03318 and ECD_03319 are separated by 101 nucleotidesECD_03319 and ECD_03320 are separated by 220 nucleotidesECD_03320 and ECD_03321 are separated by 72 nucleotides ECD_03318: ECD_03318 - zinc, cobalt and lead efflux system, at 3,468,835 to 3,471,033 _03318 ECD_03319: ECD_03319 - mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase, at 3,471,135 to 3,471,380 _03319 ECD_03320: ECD_03320 - DUF165 family inner membrane protein, at 3,471,601 to 3,472,266 _03320 ECD_03321: ECD_03321 - putative lipoprotein, at 3,472,339 to 3,472,896 _03321 Position (kb) 3471 3472Strain fitness (log2 ratio) -2 -1 0 1 2at 3470.142 kb on + strand, within ECD_03318at 3470.167 kb on - strand, within ECD_03318at 3470.471 kb on + strand, within ECD_03318at 3470.475 kb on + strand, within ECD_03318at 3470.475 kb on + strand, within ECD_03318at 3470.475 kb on + strand, within ECD_03318at 3470.475 kb on + strand, within ECD_03318at 3470.475 kb on + strand, within ECD_03318at 3470.475 kb on + strand, within ECD_03318at 3470.476 kb on - strand, within ECD_03318at 3470.476 kb on - strand, within ECD_03318at 3470.476 kb on - strand, within ECD_03318at 3470.476 kb on - strand, within ECD_03318at 3470.895 kb on + strandat 3471.146 kb on + strandat 3471.147 kb on - strandat 3471.410 kb on + strandat 3471.416 kb on - strandat 3471.484 kb on + strandat 3471.484 kb on + strandat 3471.492 kb on + strandat 3471.530 kb on + strandat 3471.530 kb on + strandat 3471.530 kb on + strandat 3471.531 kb on - strandat 3471.531 kb on - strandat 3471.531 kb on - strandat 3471.531 kb on - strandat 3471.531 kb on - strandat 3471.531 kb on - strandat 3471.531 kb on - strandat 3471.531 kb on - strandat 3471.540 kb on + strandat 3471.554 kb on + strandat 3471.554 kb on + strandat 3471.555 kb on - strandat 3471.555 kb on - strandat 3471.555 kb on - strandat 3471.558 kb on + strandat 3471.559 kb on - strandat 3471.559 kb on - strandat 3471.600 kb on + strandat 3471.600 kb on + strandat 3471.682 kb on - strand, within ECD_03320at 3471.685 kb on + strand, within ECD_03320at 3471.686 kb on - strand, within ECD_03320at 3471.686 kb on - strand, within ECD_03320at 3471.810 kb on + strand, within ECD_03320at 3471.850 kb on + strand, within ECD_03320at 3471.851 kb on - strand, within ECD_03320at 3471.851 kb on - strand, within ECD_03320at 3471.871 kb on + strand, within ECD_03320at 3471.871 kb on + strand, within ECD_03320at 3471.871 kb on + strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.874 kb on - strand, within ECD_03320at 3471.955 kb on + strand, within ECD_03320at 3472.110 kb on + strand, within ECD_03320at 3472.192 kb on + strand, within ECD_03320at 3472.193 kb on - strand, within ECD_03320at 3472.209 kb on + strandat 3472.209 kb on + strandat 3472.210 kb on - strandat 3472.289 kb on + strandat 3472.353 kb on + strandat 3472.358 kb on - strandat 3472.358 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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3,470,142 + ECD_03318 0.59 +0.2
3,470,167 - ECD_03318 0.61 +0.3
3,470,471 + ECD_03318 0.74 +0.1
3,470,475 + ECD_03318 0.75 +0.7
3,470,475 + ECD_03318 0.75 +0.8
3,470,475 + ECD_03318 0.75 -0.6
3,470,475 + ECD_03318 0.75 +1.9
3,470,475 + ECD_03318 0.75 -0.3
3,470,475 + ECD_03318 0.75 +0.4
3,470,476 - ECD_03318 0.75 -1.1
3,470,476 - ECD_03318 0.75 +0.4
3,470,476 - ECD_03318 0.75 -0.5
3,470,476 - ECD_03318 0.75 -2.6
3,470,895 + +0.4
3,471,146 + +0.0
3,471,147 - +1.1
3,471,410 + +0.7
3,471,416 - -0.9
3,471,484 + -0.5
3,471,484 + +0.1
3,471,492 + -0.6
3,471,530 + -1.0
3,471,530 + +0.7
3,471,530 + -1.2
3,471,531 - +0.6
3,471,531 - -0.1
3,471,531 - -0.2
3,471,531 - +0.6
3,471,531 - +0.3
3,471,531 - -1.5
3,471,531 - +0.0
3,471,531 - +0.0
3,471,540 + +1.3
3,471,554 + +0.2
3,471,554 + -0.4
3,471,555 - -0.3
3,471,555 - +0.6
3,471,555 - +0.7
3,471,558 + -0.2
3,471,559 - -0.1
3,471,559 - +0.1
3,471,600 + -0.7
3,471,600 + -0.2
3,471,682 - ECD_03320 0.12 +0.9
3,471,685 + ECD_03320 0.13 +1.2
3,471,686 - ECD_03320 0.13 +0.1
3,471,686 - ECD_03320 0.13 -0.3
3,471,810 + ECD_03320 0.31 -2.0
3,471,850 + ECD_03320 0.37 +0.1
3,471,851 - ECD_03320 0.38 +0.2
3,471,851 - ECD_03320 0.38 -0.8
3,471,871 + ECD_03320 0.41 -0.0
3,471,871 + ECD_03320 0.41 -0.4
3,471,871 + ECD_03320 0.41 -1.2
3,471,872 - ECD_03320 0.41 +0.3
3,471,872 - ECD_03320 0.41 -0.0
3,471,872 - ECD_03320 0.41 -0.1
3,471,872 - ECD_03320 0.41 +1.8
3,471,872 - ECD_03320 0.41 +0.3
3,471,872 - ECD_03320 0.41 -2.2
3,471,872 - ECD_03320 0.41 -0.9
3,471,872 - ECD_03320 0.41 -0.6
3,471,872 - ECD_03320 0.41 -0.5
3,471,872 - ECD_03320 0.41 -0.0
3,471,874 - ECD_03320 0.41 +0.7
3,471,955 + ECD_03320 0.53 +0.2
3,472,110 + ECD_03320 0.76 +0.1
3,472,192 + ECD_03320 0.89 +0.3
3,472,193 - ECD_03320 0.89 +0.5
3,472,209 + +0.2
3,472,209 + +0.4
3,472,210 - +0.7
3,472,289 + +1.0
3,472,353 + +0.2
3,472,358 - -0.0
3,472,358 - +0.4

Or see this region's nucleotide sequence