Strain Fitness in Escherichia coli BL21 around ECD_03244

Experiment: Bas50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03243 and ECD_03244 overlap by 89 nucleotidesECD_03244 and ECD_03245 overlap by 11 nucleotidesECD_03245 and ECD_03246 overlap by 17 nucleotidesECD_03246 and ECD_03247 overlap by 1 nucleotides ECD_03243: ECD_03243 - DNA catabolic putative fimbrial transporter, at 3,379,843 to 3,381,081 _03243 ECD_03244: ECD_03244 - DNA catabolic protein, at 3,380,993 to 3,381,397 _03244 ECD_03245: ECD_03245 - DNA catabolic protein, at 3,381,387 to 3,381,827 _03245 ECD_03246: ECD_03246 - DNA catabolic putative fimbrial assembly protein, at 3,381,811 to 3,382,350 _03246 ECD_03247: ECD_03247 - DNA catabolic putative pilus assembly protein, at 3,382,350 to 3,383,129 _03247 Position (kb) 3380 3381 3382Strain fitness (log2 ratio) -3 -2 -1 0 1at 3380.055 kb on + strand, within ECD_03243at 3380.056 kb on - strand, within ECD_03243at 3380.089 kb on + strand, within ECD_03243at 3380.090 kb on - strand, within ECD_03243at 3380.122 kb on + strand, within ECD_03243at 3380.123 kb on - strand, within ECD_03243at 3380.190 kb on + strand, within ECD_03243at 3380.190 kb on + strand, within ECD_03243at 3380.191 kb on - strand, within ECD_03243at 3380.256 kb on + strand, within ECD_03243at 3380.256 kb on + strand, within ECD_03243at 3380.257 kb on - strand, within ECD_03243at 3380.305 kb on - strand, within ECD_03243at 3380.307 kb on + strand, within ECD_03243at 3380.523 kb on + strand, within ECD_03243at 3380.523 kb on + strand, within ECD_03243at 3380.591 kb on - strand, within ECD_03243at 3380.646 kb on + strand, within ECD_03243at 3380.646 kb on + strand, within ECD_03243at 3380.647 kb on - strand, within ECD_03243at 3380.665 kb on + strand, within ECD_03243at 3380.666 kb on - strand, within ECD_03243at 3380.666 kb on - strand, within ECD_03243at 3380.666 kb on - strand, within ECD_03243at 3380.717 kb on - strand, within ECD_03243at 3380.717 kb on - strand, within ECD_03243at 3380.787 kb on + strand, within ECD_03243at 3380.869 kb on + strand, within ECD_03243at 3380.896 kb on + strand, within ECD_03243at 3380.902 kb on + strand, within ECD_03243at 3380.902 kb on + strand, within ECD_03243at 3380.903 kb on - strand, within ECD_03243at 3380.903 kb on - strand, within ECD_03243at 3381.034 kb on + strandat 3381.058 kb on + strandat 3381.059 kb on - strandat 3381.059 kb on - strandat 3381.085 kb on + strand, within ECD_03244at 3381.147 kb on - strand, within ECD_03244at 3381.168 kb on - strand, within ECD_03244at 3381.168 kb on - strand, within ECD_03244at 3381.237 kb on - strand, within ECD_03244at 3381.311 kb on + strand, within ECD_03244at 3381.311 kb on + strand, within ECD_03244at 3381.312 kb on - strand, within ECD_03244at 3381.329 kb on - strand, within ECD_03244at 3381.344 kb on - strand, within ECD_03244at 3381.367 kb on + strandat 3381.367 kb on + strandat 3381.368 kb on - strandat 3381.414 kb on + strandat 3381.414 kb on + strandat 3381.583 kb on - strand, within ECD_03245at 3381.653 kb on - strand, within ECD_03245at 3381.696 kb on + strand, within ECD_03245at 3381.729 kb on + strand, within ECD_03245at 3381.743 kb on + strand, within ECD_03245at 3381.747 kb on + strand, within ECD_03245at 3381.747 kb on + strand, within ECD_03245at 3381.844 kb on + strandat 3381.940 kb on + strand, within ECD_03246at 3381.949 kb on + strand, within ECD_03246at 3382.117 kb on + strand, within ECD_03246at 3382.156 kb on + strand, within ECD_03246at 3382.156 kb on + strand, within ECD_03246at 3382.156 kb on + strand, within ECD_03246at 3382.157 kb on - strand, within ECD_03246at 3382.202 kb on - strand, within ECD_03246at 3382.202 kb on - strand, within ECD_03246at 3382.234 kb on + strand, within ECD_03246at 3382.235 kb on - strand, within ECD_03246at 3382.237 kb on + strand, within ECD_03246at 3382.355 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
remove
3,380,055 + ECD_03243 0.17 -1.4
3,380,056 - ECD_03243 0.17 -0.8
3,380,089 + ECD_03243 0.20 +0.2
3,380,090 - ECD_03243 0.20 +0.0
3,380,122 + ECD_03243 0.23 -2.1
3,380,123 - ECD_03243 0.23 +0.7
3,380,190 + ECD_03243 0.28 -1.8
3,380,190 + ECD_03243 0.28 +0.3
3,380,191 - ECD_03243 0.28 -1.0
3,380,256 + ECD_03243 0.33 -0.5
3,380,256 + ECD_03243 0.33 +0.2
3,380,257 - ECD_03243 0.33 +0.3
3,380,305 - ECD_03243 0.37 -1.4
3,380,307 + ECD_03243 0.37 -0.0
3,380,523 + ECD_03243 0.55 -0.7
3,380,523 + ECD_03243 0.55 +0.2
3,380,591 - ECD_03243 0.60 +0.6
3,380,646 + ECD_03243 0.65 +0.5
3,380,646 + ECD_03243 0.65 -0.1
3,380,647 - ECD_03243 0.65 -2.9
3,380,665 + ECD_03243 0.66 +0.5
3,380,666 - ECD_03243 0.66 -1.3
3,380,666 - ECD_03243 0.66 -1.3
3,380,666 - ECD_03243 0.66 +0.4
3,380,717 - ECD_03243 0.71 -0.8
3,380,717 - ECD_03243 0.71 +0.1
3,380,787 + ECD_03243 0.76 +0.5
3,380,869 + ECD_03243 0.83 -0.1
3,380,896 + ECD_03243 0.85 +0.8
3,380,902 + ECD_03243 0.85 -0.4
3,380,902 + ECD_03243 0.85 +0.3
3,380,903 - ECD_03243 0.86 -0.3
3,380,903 - ECD_03243 0.86 -0.0
3,381,034 + -0.2
3,381,058 + -1.7
3,381,059 - +0.3
3,381,059 - +0.1
3,381,085 + ECD_03244 0.23 -1.6
3,381,147 - ECD_03244 0.38 -1.3
3,381,168 - ECD_03244 0.43 -0.8
3,381,168 - ECD_03244 0.43 -0.4
3,381,237 - ECD_03244 0.60 -1.8
3,381,311 + ECD_03244 0.79 -0.1
3,381,311 + ECD_03244 0.79 +0.3
3,381,312 - ECD_03244 0.79 +0.3
3,381,329 - ECD_03244 0.83 -0.3
3,381,344 - ECD_03244 0.87 -0.3
3,381,367 + +0.4
3,381,367 + -2.0
3,381,368 - -1.6
3,381,414 + -0.3
3,381,414 + -0.3
3,381,583 - ECD_03245 0.44 +0.3
3,381,653 - ECD_03245 0.60 +0.5
3,381,696 + ECD_03245 0.70 -2.8
3,381,729 + ECD_03245 0.78 -0.5
3,381,743 + ECD_03245 0.81 -1.4
3,381,747 + ECD_03245 0.82 +0.4
3,381,747 + ECD_03245 0.82 -0.8
3,381,844 + +0.5
3,381,940 + ECD_03246 0.24 -0.3
3,381,949 + ECD_03246 0.26 +0.0
3,382,117 + ECD_03246 0.57 -1.3
3,382,156 + ECD_03246 0.64 +0.2
3,382,156 + ECD_03246 0.64 +0.6
3,382,156 + ECD_03246 0.64 -0.0
3,382,157 - ECD_03246 0.64 +0.1
3,382,202 - ECD_03246 0.72 +0.9
3,382,202 - ECD_03246 0.72 -0.0
3,382,234 + ECD_03246 0.78 +0.9
3,382,235 - ECD_03246 0.79 +0.1
3,382,237 + ECD_03246 0.79 +0.1
3,382,355 - -1.3

Or see this region's nucleotide sequence