Strain Fitness in Escherichia coli BL21 around ECD_02978

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02977 and ECD_02978 are separated by 27 nucleotidesECD_02978 and ECD_02979 are separated by 275 nucleotides ECD_02977: ECD_02977 - putative L-serine dehydratase alpha chain, at 3,121,639 to 3,122,949 _02977 ECD_02978: ECD_02978 - putative transporter, at 3,122,977 to 3,124,308 _02978 ECD_02979: ECD_02979 - L-serine dehydratase 3, anaerobic, at 3,124,584 to 3,125,948 _02979 Position (kb) 3122 3123 3124 3125Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3122.018 kb on + strand, within ECD_02977at 3122.018 kb on + strand, within ECD_02977at 3122.019 kb on - strand, within ECD_02977at 3122.019 kb on - strand, within ECD_02977at 3122.019 kb on - strand, within ECD_02977at 3122.143 kb on - strand, within ECD_02977at 3122.143 kb on - strand, within ECD_02977at 3122.172 kb on + strand, within ECD_02977at 3122.196 kb on + strand, within ECD_02977at 3122.271 kb on + strand, within ECD_02977at 3122.287 kb on - strand, within ECD_02977at 3122.797 kb on + strand, within ECD_02977at 3122.797 kb on + strand, within ECD_02977at 3122.798 kb on - strand, within ECD_02977at 3122.869 kb on - strandat 3122.950 kb on - strandat 3123.053 kb on + strandat 3123.053 kb on + strandat 3123.053 kb on + strandat 3123.054 kb on - strandat 3123.054 kb on - strandat 3123.078 kb on - strandat 3123.106 kb on + strandat 3123.107 kb on - strandat 3123.107 kb on - strandat 3123.127 kb on - strand, within ECD_02978at 3123.132 kb on + strand, within ECD_02978at 3123.133 kb on - strand, within ECD_02978at 3123.163 kb on + strand, within ECD_02978at 3123.268 kb on + strand, within ECD_02978at 3123.299 kb on - strand, within ECD_02978at 3123.302 kb on + strand, within ECD_02978at 3123.387 kb on + strand, within ECD_02978at 3123.429 kb on - strand, within ECD_02978at 3123.436 kb on + strand, within ECD_02978at 3123.538 kb on - strand, within ECD_02978at 3123.640 kb on - strand, within ECD_02978at 3123.640 kb on - strand, within ECD_02978at 3123.643 kb on - strand, within ECD_02978at 3123.643 kb on - strand, within ECD_02978at 3123.692 kb on + strand, within ECD_02978at 3123.693 kb on - strand, within ECD_02978at 3123.693 kb on - strand, within ECD_02978at 3123.693 kb on - strand, within ECD_02978at 3123.693 kb on - strand, within ECD_02978at 3123.837 kb on - strand, within ECD_02978at 3123.837 kb on - strand, within ECD_02978at 3123.879 kb on + strand, within ECD_02978at 3123.879 kb on + strand, within ECD_02978at 3123.879 kb on + strand, within ECD_02978at 3123.880 kb on - strand, within ECD_02978at 3123.880 kb on - strand, within ECD_02978at 3123.880 kb on - strand, within ECD_02978at 3123.880 kb on - strand, within ECD_02978at 3123.947 kb on - strand, within ECD_02978at 3123.953 kb on + strand, within ECD_02978at 3123.992 kb on + strand, within ECD_02978at 3123.993 kb on - strand, within ECD_02978at 3124.051 kb on - strand, within ECD_02978at 3124.070 kb on + strand, within ECD_02978at 3124.071 kb on - strand, within ECD_02978at 3124.182 kb on + strandat 3124.203 kb on + strandat 3124.203 kb on + strandat 3124.204 kb on - strandat 3124.338 kb on - strandat 3124.368 kb on + strandat 3124.377 kb on + strandat 3124.400 kb on - strandat 3124.637 kb on + strandat 3124.638 kb on - strandat 3124.638 kb on - strandat 3124.646 kb on + strandat 3124.664 kb on - strandat 3124.738 kb on - strand, within ECD_02979at 3124.763 kb on + strand, within ECD_02979at 3124.785 kb on + strand, within ECD_02979at 3124.786 kb on - strand, within ECD_02979at 3124.854 kb on + strand, within ECD_02979at 3124.854 kb on + strand, within ECD_02979at 3124.854 kb on + strand, within ECD_02979at 3124.855 kb on - strand, within ECD_02979at 3124.855 kb on - strand, within ECD_02979at 3124.879 kb on - strand, within ECD_02979at 3124.970 kb on + strand, within ECD_02979at 3124.971 kb on - strand, within ECD_02979at 3124.972 kb on + strand, within ECD_02979at 3124.972 kb on + strand, within ECD_02979at 3125.045 kb on + strand, within ECD_02979at 3125.050 kb on + strand, within ECD_02979at 3125.050 kb on + strand, within ECD_02979at 3125.050 kb on + strand, within ECD_02979at 3125.051 kb on - strand, within ECD_02979at 3125.051 kb on - strand, within ECD_02979at 3125.053 kb on + strand, within ECD_02979at 3125.061 kb on + strand, within ECD_02979at 3125.149 kb on + strand, within ECD_02979at 3125.149 kb on + strand, within ECD_02979at 3125.149 kb on + strand, within ECD_02979at 3125.150 kb on - strand, within ECD_02979

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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3,122,018 + ECD_02977 0.29 +0.3
3,122,018 + ECD_02977 0.29 -0.4
3,122,019 - ECD_02977 0.29 +0.4
3,122,019 - ECD_02977 0.29 -0.9
3,122,019 - ECD_02977 0.29 +0.6
3,122,143 - ECD_02977 0.38 +0.7
3,122,143 - ECD_02977 0.38 -1.6
3,122,172 + ECD_02977 0.41 +2.6
3,122,196 + ECD_02977 0.42 -0.3
3,122,271 + ECD_02977 0.48 -0.7
3,122,287 - ECD_02977 0.49 +1.1
3,122,797 + ECD_02977 0.88 +0.5
3,122,797 + ECD_02977 0.88 +0.7
3,122,798 - ECD_02977 0.88 -0.5
3,122,869 - -0.3
3,122,950 - -0.4
3,123,053 + -0.3
3,123,053 + -0.6
3,123,053 + +0.1
3,123,054 - -0.7
3,123,054 - +1.6
3,123,078 - +0.5
3,123,106 + -0.2
3,123,107 - -0.0
3,123,107 - +0.1
3,123,127 - ECD_02978 0.11 -0.6
3,123,132 + ECD_02978 0.12 -3.2
3,123,133 - ECD_02978 0.12 -0.0
3,123,163 + ECD_02978 0.14 +0.1
3,123,268 + ECD_02978 0.22 +1.7
3,123,299 - ECD_02978 0.24 -0.9
3,123,302 + ECD_02978 0.24 +0.4
3,123,387 + ECD_02978 0.31 +0.8
3,123,429 - ECD_02978 0.34 +1.9
3,123,436 + ECD_02978 0.34 -1.2
3,123,538 - ECD_02978 0.42 -0.7
3,123,640 - ECD_02978 0.50 +0.7
3,123,640 - ECD_02978 0.50 -1.6
3,123,643 - ECD_02978 0.50 -0.7
3,123,643 - ECD_02978 0.50 +0.1
3,123,692 + ECD_02978 0.54 +0.3
3,123,693 - ECD_02978 0.54 -0.5
3,123,693 - ECD_02978 0.54 -1.4
3,123,693 - ECD_02978 0.54 -0.8
3,123,693 - ECD_02978 0.54 -1.4
3,123,837 - ECD_02978 0.65 +0.3
3,123,837 - ECD_02978 0.65 -0.8
3,123,879 + ECD_02978 0.68 +0.3
3,123,879 + ECD_02978 0.68 -1.3
3,123,879 + ECD_02978 0.68 -0.4
3,123,880 - ECD_02978 0.68 +1.6
3,123,880 - ECD_02978 0.68 -0.6
3,123,880 - ECD_02978 0.68 +0.1
3,123,880 - ECD_02978 0.68 -0.2
3,123,947 - ECD_02978 0.73 +1.6
3,123,953 + ECD_02978 0.73 +0.8
3,123,992 + ECD_02978 0.76 -0.3
3,123,993 - ECD_02978 0.76 +0.1
3,124,051 - ECD_02978 0.81 +0.2
3,124,070 + ECD_02978 0.82 -0.3
3,124,071 - ECD_02978 0.82 -0.1
3,124,182 + -0.4
3,124,203 + +0.8
3,124,203 + +0.0
3,124,204 - +0.1
3,124,338 - -1.7
3,124,368 + +0.8
3,124,377 + -0.6
3,124,400 - -0.9
3,124,637 + -1.0
3,124,638 - -0.9
3,124,638 - -2.2
3,124,646 + -0.1
3,124,664 - +0.8
3,124,738 - ECD_02979 0.11 -0.3
3,124,763 + ECD_02979 0.13 -0.8
3,124,785 + ECD_02979 0.15 +0.7
3,124,786 - ECD_02979 0.15 +0.7
3,124,854 + ECD_02979 0.20 +0.2
3,124,854 + ECD_02979 0.20 -0.8
3,124,854 + ECD_02979 0.20 -0.1
3,124,855 - ECD_02979 0.20 +0.3
3,124,855 - ECD_02979 0.20 +0.7
3,124,879 - ECD_02979 0.22 +0.2
3,124,970 + ECD_02979 0.28 -2.3
3,124,971 - ECD_02979 0.28 +0.8
3,124,972 + ECD_02979 0.28 -0.1
3,124,972 + ECD_02979 0.28 +0.0
3,125,045 + ECD_02979 0.34 +0.8
3,125,050 + ECD_02979 0.34 -0.1
3,125,050 + ECD_02979 0.34 +0.0
3,125,050 + ECD_02979 0.34 -1.1
3,125,051 - ECD_02979 0.34 +1.1
3,125,051 - ECD_02979 0.34 +0.6
3,125,053 + ECD_02979 0.34 -0.1
3,125,061 + ECD_02979 0.35 +0.2
3,125,149 + ECD_02979 0.41 -0.7
3,125,149 + ECD_02979 0.41 -1.3
3,125,149 + ECD_02979 0.41 -1.1
3,125,150 - ECD_02979 0.41 +0.3

Or see this region's nucleotide sequence