Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02977 and ECD_02978 are separated by 27 nucleotides ECD_02978 and ECD_02979 are separated by 275 nucleotides
ECD_02977: ECD_02977 - putative L-serine dehydratase alpha chain, at 3,121,639 to 3,122,949
_02977
ECD_02978: ECD_02978 - putative transporter, at 3,122,977 to 3,124,308
_02978
ECD_02979: ECD_02979 - L-serine dehydratase 3, anaerobic, at 3,124,584 to 3,125,948
_02979
Position (kb)
3122
3123
3124
3125 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3122.018 kb on + strand, within ECD_02977 at 3122.018 kb on + strand, within ECD_02977 at 3122.019 kb on - strand, within ECD_02977 at 3122.019 kb on - strand, within ECD_02977 at 3122.019 kb on - strand, within ECD_02977 at 3122.143 kb on - strand, within ECD_02977 at 3122.143 kb on - strand, within ECD_02977 at 3122.172 kb on + strand, within ECD_02977 at 3122.196 kb on + strand, within ECD_02977 at 3122.271 kb on + strand, within ECD_02977 at 3122.287 kb on - strand, within ECD_02977 at 3122.797 kb on + strand, within ECD_02977 at 3122.797 kb on + strand, within ECD_02977 at 3122.798 kb on - strand, within ECD_02977 at 3122.869 kb on - strand at 3122.950 kb on - strand at 3123.053 kb on + strand at 3123.053 kb on + strand at 3123.053 kb on + strand at 3123.054 kb on - strand at 3123.054 kb on - strand at 3123.078 kb on - strand at 3123.106 kb on + strand at 3123.107 kb on - strand at 3123.107 kb on - strand at 3123.127 kb on - strand, within ECD_02978 at 3123.132 kb on + strand, within ECD_02978 at 3123.133 kb on - strand, within ECD_02978 at 3123.163 kb on + strand, within ECD_02978 at 3123.268 kb on + strand, within ECD_02978 at 3123.299 kb on - strand, within ECD_02978 at 3123.302 kb on + strand, within ECD_02978 at 3123.387 kb on + strand, within ECD_02978 at 3123.429 kb on - strand, within ECD_02978 at 3123.436 kb on + strand, within ECD_02978 at 3123.538 kb on - strand, within ECD_02978 at 3123.640 kb on - strand, within ECD_02978 at 3123.640 kb on - strand, within ECD_02978 at 3123.643 kb on - strand, within ECD_02978 at 3123.643 kb on - strand, within ECD_02978 at 3123.692 kb on + strand, within ECD_02978 at 3123.693 kb on - strand, within ECD_02978 at 3123.693 kb on - strand, within ECD_02978 at 3123.693 kb on - strand, within ECD_02978 at 3123.693 kb on - strand, within ECD_02978 at 3123.837 kb on - strand, within ECD_02978 at 3123.837 kb on - strand, within ECD_02978 at 3123.879 kb on + strand, within ECD_02978 at 3123.879 kb on + strand, within ECD_02978 at 3123.879 kb on + strand, within ECD_02978 at 3123.880 kb on - strand, within ECD_02978 at 3123.880 kb on - strand, within ECD_02978 at 3123.880 kb on - strand, within ECD_02978 at 3123.880 kb on - strand, within ECD_02978 at 3123.947 kb on - strand, within ECD_02978 at 3123.953 kb on + strand, within ECD_02978 at 3123.992 kb on + strand, within ECD_02978 at 3123.993 kb on - strand, within ECD_02978 at 3124.051 kb on - strand, within ECD_02978 at 3124.070 kb on + strand, within ECD_02978 at 3124.071 kb on - strand, within ECD_02978 at 3124.182 kb on + strand at 3124.203 kb on + strand at 3124.203 kb on + strand at 3124.204 kb on - strand at 3124.338 kb on - strand at 3124.368 kb on + strand at 3124.377 kb on + strand at 3124.400 kb on - strand at 3124.637 kb on + strand at 3124.638 kb on - strand at 3124.638 kb on - strand at 3124.646 kb on + strand at 3124.664 kb on - strand at 3124.738 kb on - strand, within ECD_02979 at 3124.763 kb on + strand, within ECD_02979 at 3124.785 kb on + strand, within ECD_02979 at 3124.786 kb on - strand, within ECD_02979 at 3124.854 kb on + strand, within ECD_02979 at 3124.854 kb on + strand, within ECD_02979 at 3124.854 kb on + strand, within ECD_02979 at 3124.855 kb on - strand, within ECD_02979 at 3124.855 kb on - strand, within ECD_02979 at 3124.879 kb on - strand, within ECD_02979 at 3124.970 kb on + strand, within ECD_02979 at 3124.971 kb on - strand, within ECD_02979 at 3124.972 kb on + strand, within ECD_02979 at 3124.972 kb on + strand, within ECD_02979 at 3125.045 kb on + strand, within ECD_02979 at 3125.050 kb on + strand, within ECD_02979 at 3125.050 kb on + strand, within ECD_02979 at 3125.050 kb on + strand, within ECD_02979 at 3125.051 kb on - strand, within ECD_02979 at 3125.051 kb on - strand, within ECD_02979 at 3125.053 kb on + strand, within ECD_02979 at 3125.061 kb on + strand, within ECD_02979 at 3125.149 kb on + strand, within ECD_02979 at 3125.149 kb on + strand, within ECD_02979 at 3125.149 kb on + strand, within ECD_02979 at 3125.150 kb on - strand, within ECD_02979
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 3,122,018 + ECD_02977 0.29 +0.3 3,122,018 + ECD_02977 0.29 -0.4 3,122,019 - ECD_02977 0.29 +0.4 3,122,019 - ECD_02977 0.29 -0.9 3,122,019 - ECD_02977 0.29 +0.6 3,122,143 - ECD_02977 0.38 +0.7 3,122,143 - ECD_02977 0.38 -1.6 3,122,172 + ECD_02977 0.41 +2.6 3,122,196 + ECD_02977 0.42 -0.3 3,122,271 + ECD_02977 0.48 -0.7 3,122,287 - ECD_02977 0.49 +1.1 3,122,797 + ECD_02977 0.88 +0.5 3,122,797 + ECD_02977 0.88 +0.7 3,122,798 - ECD_02977 0.88 -0.5 3,122,869 - -0.3 3,122,950 - -0.4 3,123,053 + -0.3 3,123,053 + -0.6 3,123,053 + +0.1 3,123,054 - -0.7 3,123,054 - +1.6 3,123,078 - +0.5 3,123,106 + -0.2 3,123,107 - -0.0 3,123,107 - +0.1 3,123,127 - ECD_02978 0.11 -0.6 3,123,132 + ECD_02978 0.12 -3.2 3,123,133 - ECD_02978 0.12 -0.0 3,123,163 + ECD_02978 0.14 +0.1 3,123,268 + ECD_02978 0.22 +1.7 3,123,299 - ECD_02978 0.24 -0.9 3,123,302 + ECD_02978 0.24 +0.4 3,123,387 + ECD_02978 0.31 +0.8 3,123,429 - ECD_02978 0.34 +1.9 3,123,436 + ECD_02978 0.34 -1.2 3,123,538 - ECD_02978 0.42 -0.7 3,123,640 - ECD_02978 0.50 +0.7 3,123,640 - ECD_02978 0.50 -1.6 3,123,643 - ECD_02978 0.50 -0.7 3,123,643 - ECD_02978 0.50 +0.1 3,123,692 + ECD_02978 0.54 +0.3 3,123,693 - ECD_02978 0.54 -0.5 3,123,693 - ECD_02978 0.54 -1.4 3,123,693 - ECD_02978 0.54 -0.8 3,123,693 - ECD_02978 0.54 -1.4 3,123,837 - ECD_02978 0.65 +0.3 3,123,837 - ECD_02978 0.65 -0.8 3,123,879 + ECD_02978 0.68 +0.3 3,123,879 + ECD_02978 0.68 -1.3 3,123,879 + ECD_02978 0.68 -0.4 3,123,880 - ECD_02978 0.68 +1.6 3,123,880 - ECD_02978 0.68 -0.6 3,123,880 - ECD_02978 0.68 +0.1 3,123,880 - ECD_02978 0.68 -0.2 3,123,947 - ECD_02978 0.73 +1.6 3,123,953 + ECD_02978 0.73 +0.8 3,123,992 + ECD_02978 0.76 -0.3 3,123,993 - ECD_02978 0.76 +0.1 3,124,051 - ECD_02978 0.81 +0.2 3,124,070 + ECD_02978 0.82 -0.3 3,124,071 - ECD_02978 0.82 -0.1 3,124,182 + -0.4 3,124,203 + +0.8 3,124,203 + +0.0 3,124,204 - +0.1 3,124,338 - -1.7 3,124,368 + +0.8 3,124,377 + -0.6 3,124,400 - -0.9 3,124,637 + -1.0 3,124,638 - -0.9 3,124,638 - -2.2 3,124,646 + -0.1 3,124,664 - +0.8 3,124,738 - ECD_02979 0.11 -0.3 3,124,763 + ECD_02979 0.13 -0.8 3,124,785 + ECD_02979 0.15 +0.7 3,124,786 - ECD_02979 0.15 +0.7 3,124,854 + ECD_02979 0.20 +0.2 3,124,854 + ECD_02979 0.20 -0.8 3,124,854 + ECD_02979 0.20 -0.1 3,124,855 - ECD_02979 0.20 +0.3 3,124,855 - ECD_02979 0.20 +0.7 3,124,879 - ECD_02979 0.22 +0.2 3,124,970 + ECD_02979 0.28 -2.3 3,124,971 - ECD_02979 0.28 +0.8 3,124,972 + ECD_02979 0.28 -0.1 3,124,972 + ECD_02979 0.28 +0.0 3,125,045 + ECD_02979 0.34 +0.8 3,125,050 + ECD_02979 0.34 -0.1 3,125,050 + ECD_02979 0.34 +0.0 3,125,050 + ECD_02979 0.34 -1.1 3,125,051 - ECD_02979 0.34 +1.1 3,125,051 - ECD_02979 0.34 +0.6 3,125,053 + ECD_02979 0.34 -0.1 3,125,061 + ECD_02979 0.35 +0.2 3,125,149 + ECD_02979 0.41 -0.7 3,125,149 + ECD_02979 0.41 -1.3 3,125,149 + ECD_02979 0.41 -1.1 3,125,150 - ECD_02979 0.41 +0.3
Or see this region's nucleotide sequence