Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02876 and ECD_02877 are separated by 39 nucleotides ECD_02877 and ECD_02878 are separated by 190 nucleotides ECD_02878 and ECD_02879 are separated by 271 nucleotides ECD_02879 and ECD_02880 are separated by 6 nucleotides
ECD_02876: ECD_02876 - L-glyceraldehyde 3-phosphate reductase, at 3,015,334 to 3,016,374
_02876
ECD_02877: ECD_02877 - UPF0114 family putative inner membrane protein, at 3,016,414 to 3,016,908
_02877
ECD_02878: ECD_02878 - putative oxidoreductase, at 3,017,099 to 3,017,983
_02878
ECD_02879: ECD_02879 - membrane spanning protein in TonB-ExbB-ExbD complex, at 3,018,255 to 3,018,680
_02879
ECD_02880: ECD_02880 - membrane spanning protein in TonB-ExbB-ExbD complex, at 3,018,687 to 3,019,421
_02880
Position (kb)
3017
3018 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3016.140 kb on - strand, within ECD_02876 at 3016.256 kb on + strand, within ECD_02876 at 3016.256 kb on + strand, within ECD_02876 at 3016.293 kb on + strand at 3016.293 kb on + strand at 3016.294 kb on - strand at 3016.381 kb on - strand at 3016.423 kb on - strand at 3016.445 kb on + strand at 3016.445 kb on + strand at 3016.494 kb on - strand, within ECD_02877 at 3016.494 kb on - strand, within ECD_02877 at 3016.494 kb on - strand, within ECD_02877 at 3016.546 kb on + strand, within ECD_02877 at 3016.677 kb on - strand, within ECD_02877 at 3016.776 kb on + strand, within ECD_02877 at 3016.777 kb on - strand, within ECD_02877 at 3016.795 kb on - strand, within ECD_02877 at 3016.795 kb on - strand, within ECD_02877 at 3016.829 kb on - strand, within ECD_02877 at 3016.851 kb on - strand, within ECD_02877 at 3016.851 kb on - strand, within ECD_02877 at 3016.851 kb on - strand, within ECD_02877 at 3016.880 kb on + strand at 3016.880 kb on + strand at 3016.880 kb on + strand at 3016.880 kb on + strand at 3016.881 kb on - strand at 3016.881 kb on - strand at 3016.881 kb on - strand at 3016.881 kb on - strand at 3016.881 kb on - strand at 3016.881 kb on - strand at 3016.881 kb on - strand at 3016.881 kb on - strand at 3016.881 kb on - strand at 3016.881 kb on - strand at 3016.881 kb on - strand at 3016.881 kb on - strand at 3016.908 kb on + strand at 3016.908 kb on + strand at 3016.909 kb on - strand at 3016.909 kb on - strand at 3016.909 kb on - strand at 3016.909 kb on - strand at 3016.909 kb on - strand at 3016.942 kb on + strand at 3016.942 kb on + strand at 3016.942 kb on + strand at 3016.942 kb on + strand at 3016.942 kb on + strand at 3016.943 kb on - strand at 3016.943 kb on - strand at 3016.943 kb on - strand at 3016.984 kb on + strand at 3016.984 kb on + strand at 3016.984 kb on + strand at 3016.985 kb on - strand at 3016.985 kb on - strand at 3016.985 kb on - strand at 3016.985 kb on - strand at 3016.985 kb on - strand at 3016.987 kb on - strand at 3016.987 kb on - strand at 3016.987 kb on - strand at 3016.987 kb on - strand at 3016.991 kb on + strand at 3017.006 kb on + strand at 3017.019 kb on + strand at 3017.040 kb on + strand at 3017.041 kb on - strand at 3017.061 kb on + strand at 3017.132 kb on + strand at 3017.133 kb on - strand at 3017.133 kb on - strand at 3017.219 kb on + strand, within ECD_02878 at 3017.219 kb on + strand, within ECD_02878 at 3017.219 kb on + strand, within ECD_02878 at 3017.220 kb on - strand, within ECD_02878 at 3017.220 kb on - strand, within ECD_02878 at 3017.248 kb on + strand, within ECD_02878 at 3017.248 kb on + strand, within ECD_02878 at 3017.336 kb on + strand, within ECD_02878 at 3017.337 kb on - strand, within ECD_02878 at 3017.491 kb on + strand, within ECD_02878 at 3017.638 kb on + strand, within ECD_02878 at 3017.638 kb on + strand, within ECD_02878 at 3017.638 kb on + strand, within ECD_02878 at 3017.639 kb on - strand, within ECD_02878 at 3017.639 kb on - strand, within ECD_02878 at 3017.639 kb on - strand, within ECD_02878 at 3017.639 kb on - strand, within ECD_02878 at 3017.666 kb on + strand, within ECD_02878 at 3017.685 kb on + strand, within ECD_02878 at 3017.693 kb on + strand, within ECD_02878 at 3017.694 kb on - strand, within ECD_02878 at 3017.761 kb on + strand, within ECD_02878 at 3017.901 kb on + strand at 3017.901 kb on + strand at 3017.901 kb on + strand at 3017.901 kb on + strand at 3017.901 kb on + strand at 3017.901 kb on + strand at 3017.901 kb on + strand at 3017.901 kb on + strand at 3017.901 kb on + strand at 3017.901 kb on + strand at 3017.902 kb on - strand at 3017.902 kb on - strand at 3017.902 kb on - strand at 3017.902 kb on - strand at 3017.903 kb on + strand at 3017.903 kb on + strand at 3017.903 kb on + strand at 3017.904 kb on - strand at 3017.904 kb on - strand at 3017.904 kb on - strand at 3017.904 kb on - strand at 3017.909 kb on + strand at 3017.909 kb on + strand at 3017.909 kb on + strand at 3017.910 kb on - strand at 3017.933 kb on + strand at 3017.933 kb on + strand at 3017.933 kb on + strand at 3017.933 kb on + strand at 3017.934 kb on - strand at 3017.934 kb on - strand at 3017.977 kb on - strand at 3017.977 kb on - strand at 3018.035 kb on - strand at 3018.114 kb on + strand at 3018.143 kb on + strand at 3018.144 kb on - strand at 3018.234 kb on - strand at 3018.256 kb on + strand at 3018.257 kb on - strand at 3018.257 kb on - strand at 3018.291 kb on + strand at 3018.292 kb on - strand at 3018.292 kb on - strand at 3018.328 kb on - strand, within ECD_02879 at 3018.487 kb on + strand, within ECD_02879 at 3018.487 kb on + strand, within ECD_02879 at 3018.487 kb on + strand, within ECD_02879 at 3018.487 kb on + strand, within ECD_02879 at 3018.488 kb on - strand, within ECD_02879 at 3018.525 kb on - strand, within ECD_02879 at 3018.579 kb on - strand, within ECD_02879 at 3018.584 kb on + strand, within ECD_02879 at 3018.629 kb on + strand, within ECD_02879 at 3018.630 kb on - strand, within ECD_02879 at 3018.700 kb on - strand at 3018.775 kb on - strand, within ECD_02880 at 3018.775 kb on - strand, within ECD_02880 at 3018.775 kb on - strand, within ECD_02880 at 3018.775 kb on - strand, within ECD_02880 at 3018.831 kb on + strand, within ECD_02880 at 3018.831 kb on + strand, within ECD_02880 at 3018.832 kb on - strand, within ECD_02880 at 3018.832 kb on - strand, within ECD_02880 at 3018.832 kb on - strand, within ECD_02880 at 3018.832 kb on - strand, within ECD_02880 at 3018.832 kb on - strand, within ECD_02880 at 3018.832 kb on - strand, within ECD_02880 at 3018.832 kb on - strand, within ECD_02880 at 3018.832 kb on - strand, within ECD_02880 at 3018.838 kb on + strand, within ECD_02880 at 3018.838 kb on + strand, within ECD_02880 at 3018.838 kb on + strand, within ECD_02880 at 3018.838 kb on + strand, within ECD_02880 at 3018.838 kb on + strand, within ECD_02880 at 3018.838 kb on + strand, within ECD_02880 at 3018.838 kb on + strand, within ECD_02880 at 3018.839 kb on - strand, within ECD_02880 at 3018.839 kb on - strand, within ECD_02880 at 3018.839 kb on - strand, within ECD_02880 at 3018.885 kb on + strand, within ECD_02880 at 3018.953 kb on + strand, within ECD_02880
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 3,016,140 - ECD_02876 0.77 -0.9 3,016,256 + ECD_02876 0.89 -0.6 3,016,256 + ECD_02876 0.89 +1.0 3,016,293 + -0.6 3,016,293 + +0.6 3,016,294 - -0.8 3,016,381 - +1.2 3,016,423 - -0.8 3,016,445 + +0.2 3,016,445 + -0.5 3,016,494 - ECD_02877 0.16 -0.4 3,016,494 - ECD_02877 0.16 +0.3 3,016,494 - ECD_02877 0.16 +0.2 3,016,546 + ECD_02877 0.27 -0.6 3,016,677 - ECD_02877 0.53 +0.5 3,016,776 + ECD_02877 0.73 +0.9 3,016,777 - ECD_02877 0.73 -1.3 3,016,795 - ECD_02877 0.77 -0.3 3,016,795 - ECD_02877 0.77 +0.2 3,016,829 - ECD_02877 0.84 -0.3 3,016,851 - ECD_02877 0.88 -0.1 3,016,851 - ECD_02877 0.88 -0.8 3,016,851 - ECD_02877 0.88 +0.3 3,016,880 + +0.6 3,016,880 + +0.9 3,016,880 + +0.2 3,016,880 + +2.3 3,016,881 - -0.6 3,016,881 - -0.5 3,016,881 - +0.0 3,016,881 - -0.5 3,016,881 - -2.3 3,016,881 - +0.4 3,016,881 - -0.1 3,016,881 - +0.1 3,016,881 - +0.7 3,016,881 - +0.8 3,016,881 - -0.8 3,016,881 - +0.6 3,016,908 + -0.4 3,016,908 + -2.5 3,016,909 - +0.4 3,016,909 - +0.1 3,016,909 - +0.0 3,016,909 - +1.1 3,016,909 - -0.5 3,016,942 + -0.7 3,016,942 + +0.8 3,016,942 + -0.7 3,016,942 + +0.1 3,016,942 + -0.8 3,016,943 - -1.0 3,016,943 - -0.2 3,016,943 - -0.8 3,016,984 + -1.8 3,016,984 + -0.8 3,016,984 + -1.3 3,016,985 - -0.2 3,016,985 - +0.7 3,016,985 - +0.7 3,016,985 - +0.6 3,016,985 - -0.3 3,016,987 - +0.5 3,016,987 - +0.3 3,016,987 - -0.8 3,016,987 - +0.1 3,016,991 + -0.6 3,017,006 + +0.4 3,017,019 + -2.6 3,017,040 + -0.2 3,017,041 - -0.8 3,017,061 + +0.2 3,017,132 + -1.1 3,017,133 - -2.3 3,017,133 - +1.6 3,017,219 + ECD_02878 0.14 -0.3 3,017,219 + ECD_02878 0.14 -0.8 3,017,219 + ECD_02878 0.14 -0.3 3,017,220 - ECD_02878 0.14 -1.4 3,017,220 - ECD_02878 0.14 +0.0 3,017,248 + ECD_02878 0.17 -0.0 3,017,248 + ECD_02878 0.17 -0.9 3,017,336 + ECD_02878 0.27 -1.8 3,017,337 - ECD_02878 0.27 -0.9 3,017,491 + ECD_02878 0.44 -1.0 3,017,638 + ECD_02878 0.61 +4.2 3,017,638 + ECD_02878 0.61 +0.5 3,017,638 + ECD_02878 0.61 -2.3 3,017,639 - ECD_02878 0.61 +0.7 3,017,639 - ECD_02878 0.61 +0.7 3,017,639 - ECD_02878 0.61 -0.1 3,017,639 - ECD_02878 0.61 -0.2 3,017,666 + ECD_02878 0.64 -1.4 3,017,685 + ECD_02878 0.66 +0.8 3,017,693 + ECD_02878 0.67 -1.8 3,017,694 - ECD_02878 0.67 +0.1 3,017,761 + ECD_02878 0.75 -0.6 3,017,901 + +0.7 3,017,901 + -1.4 3,017,901 + -0.9 3,017,901 + -1.2 3,017,901 + +0.2 3,017,901 + +0.5 3,017,901 + -0.3 3,017,901 + +1.8 3,017,901 + -1.0 3,017,901 + -0.5 3,017,902 - +0.1 3,017,902 - +1.2 3,017,902 - -1.3 3,017,902 - -0.1 3,017,903 + +1.6 3,017,903 + +0.5 3,017,903 + +0.7 3,017,904 - -0.4 3,017,904 - -0.4 3,017,904 - -0.2 3,017,904 - -0.8 3,017,909 + -0.2 3,017,909 + +0.4 3,017,909 + -0.4 3,017,910 - -2.0 3,017,933 + +0.3 3,017,933 + -0.2 3,017,933 + +0.3 3,017,933 + +0.9 3,017,934 - -1.4 3,017,934 - -1.5 3,017,977 - -0.0 3,017,977 - -2.2 3,018,035 - -1.3 3,018,114 + +2.6 3,018,143 + -0.7 3,018,144 - +0.3 3,018,234 - -0.4 3,018,256 + +0.0 3,018,257 - +0.2 3,018,257 - +0.8 3,018,291 + +0.4 3,018,292 - +1.1 3,018,292 - -0.3 3,018,328 - ECD_02879 0.17 +0.3 3,018,487 + ECD_02879 0.54 -1.3 3,018,487 + ECD_02879 0.54 -0.8 3,018,487 + ECD_02879 0.54 -0.9 3,018,487 + ECD_02879 0.54 +0.6 3,018,488 - ECD_02879 0.55 -1.0 3,018,525 - ECD_02879 0.63 +1.3 3,018,579 - ECD_02879 0.76 +0.3 3,018,584 + ECD_02879 0.77 +0.6 3,018,629 + ECD_02879 0.88 -0.0 3,018,630 - ECD_02879 0.88 +0.7 3,018,700 - -1.0 3,018,775 - ECD_02880 0.12 -1.6 3,018,775 - ECD_02880 0.12 -0.2 3,018,775 - ECD_02880 0.12 +1.1 3,018,775 - ECD_02880 0.12 +0.3 3,018,831 + ECD_02880 0.20 +0.5 3,018,831 + ECD_02880 0.20 +0.4 3,018,832 - ECD_02880 0.20 +0.8 3,018,832 - ECD_02880 0.20 +0.6 3,018,832 - ECD_02880 0.20 -1.1 3,018,832 - ECD_02880 0.20 -0.1 3,018,832 - ECD_02880 0.20 -0.1 3,018,832 - ECD_02880 0.20 -0.2 3,018,832 - ECD_02880 0.20 +1.3 3,018,832 - ECD_02880 0.20 -0.1 3,018,838 + ECD_02880 0.21 +0.1 3,018,838 + ECD_02880 0.21 +0.1 3,018,838 + ECD_02880 0.21 +2.0 3,018,838 + ECD_02880 0.21 +0.2 3,018,838 + ECD_02880 0.21 -0.0 3,018,838 + ECD_02880 0.21 +1.9 3,018,838 + ECD_02880 0.21 -0.6 3,018,839 - ECD_02880 0.21 +0.4 3,018,839 - ECD_02880 0.21 +1.4 3,018,839 - ECD_02880 0.21 +0.3 3,018,885 + ECD_02880 0.27 -2.2 3,018,953 + ECD_02880 0.36 -1.5
Or see this region's nucleotide sequence