Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02284 and ECD_02285 are separated by 512 nucleotides ECD_02285 and ECD_02286 are separated by 295 nucleotides ECD_02286 and ECD_02287 are separated by 76 nucleotides
ECD_02284: ECD_02284 - formyl-CoA transferase, NAD(P)-binding, at 2,369,892 to 2,371,142
_02284
ECD_02285: ECD_02285 - uncharacterized protein, at 2,371,655 to 2,372,287
_02285
ECD_02286: ECD_02286 - putative lipoprotein involved in colanic acid biosynthesis, at 2,372,583 to 2,372,858
_02286
ECD_02287: ECD_02287 - DUF2545 family putative inner membrane protein, at 2,372,935 to 2,373,177
_02287
Position (kb) 2371
2372
2373 Strain fitness (log2 ratio) -1
0
1 at 2370.735 kb on + strand, within ECD_02284 at 2370.736 kb on - strand, within ECD_02284 at 2371.731 kb on + strand, within ECD_02285 at 2372.813 kb on + strand, within ECD_02286 at 2372.998 kb on - strand, within ECD_02287 at 2373.047 kb on + strand, within ECD_02287 at 2373.051 kb on - strand, within ECD_02287 at 2373.167 kb on - strand at 2373.167 kb on - strand at 2373.167 kb on - strand at 2373.171 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 2,370,735 + ECD_02284 0.67 +0.1 2,370,736 - ECD_02284 0.67 +0.6 2,371,731 + ECD_02285 0.12 +0.5 2,372,813 + ECD_02286 0.83 +0.9 2,372,998 - ECD_02287 0.26 +0.8 2,373,047 + ECD_02287 0.46 -0.1 2,373,051 - ECD_02287 0.48 +0.4 2,373,167 - -1.1 2,373,167 - +0.6 2,373,167 - -0.3 2,373,171 - +0.0
Or see this region's nucleotide sequence