Strain Fitness in Escherichia coli BL21 around ECD_01587

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01586 and ECD_01587 are separated by 390 nucleotidesECD_01587 and ECD_01588 are separated by 220 nucleotides ECD_01586: ECD_01586 - beta-D-glucuronidase, at 1,639,457 to 1,641,268 _01586 ECD_01587: ECD_01587 - transcriptional repressor, at 1,641,659 to 1,642,249 _01587 ECD_01588: ECD_01588 - 7-alpha-hydroxysteroid dehydrogenase, NAD-dependent, at 1,642,470 to 1,643,237 _01588 Position (kb) 1641 1642 1643Strain fitness (log2 ratio) -1 0 1at 1640.882 kb on - strand, within ECD_01586at 1641.082 kb on - strand, within ECD_01586at 1641.872 kb on - strand, within ECD_01587at 1642.469 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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1,640,882 - ECD_01586 0.79 +0.3
1,641,082 - ECD_01586 0.90 -0.4
1,641,872 - ECD_01587 0.36 +0.6
1,642,469 - -0.1

Or see this region's nucleotide sequence