Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01218 and ECD_01219 are separated by 14 nucleotides ECD_01219 and ECD_01220 are separated by 11 nucleotides ECD_01220 and ECD_01221 overlap by 4 nucleotides
ECD_01218: ECD_01218 - oligopeptide ABC transporter permease, at 1,288,491 to 1,289,411
_01218
ECD_01219: ECD_01219 - oligopeptide ABC transporter permease, at 1,289,426 to 1,290,334
_01219
ECD_01220: ECD_01220 - oligopeptide ABC transporter ATPase, at 1,290,346 to 1,291,359
_01220
ECD_01221: ECD_01221 - oligopeptide ABC transporter ATPase, at 1,291,356 to 1,292,360
_01221
Position (kb)
1290
1291
1292 Strain fitness (log2 ratio)
-1
0
1
2 at 1289.377 kb on + strand at 1289.377 kb on + strand at 1289.377 kb on + strand at 1289.524 kb on + strand, within ECD_01219 at 1289.731 kb on + strand, within ECD_01219 at 1289.731 kb on + strand, within ECD_01219 at 1289.968 kb on + strand, within ECD_01219 at 1290.703 kb on + strand, within ECD_01220 at 1290.703 kb on + strand, within ECD_01220 at 1290.705 kb on + strand, within ECD_01220 at 1290.705 kb on + strand, within ECD_01220 at 1290.747 kb on + strand, within ECD_01220 at 1290.896 kb on + strand, within ECD_01220 at 1290.906 kb on + strand, within ECD_01220 at 1291.067 kb on + strand, within ECD_01220 at 1291.072 kb on + strand, within ECD_01220 at 1291.117 kb on + strand, within ECD_01220 at 1291.117 kb on + strand, within ECD_01220 at 1291.135 kb on + strand, within ECD_01220 at 1291.206 kb on + strand, within ECD_01220 at 1291.284 kb on + strand at 1291.335 kb on + strand at 1291.746 kb on + strand, within ECD_01221 at 1292.100 kb on + strand, within ECD_01221 at 1292.218 kb on + strand, within ECD_01221
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 1,289,377 + +0.2 1,289,377 + +0.4 1,289,377 + -0.4 1,289,524 + ECD_01219 0.11 +0.6 1,289,731 + ECD_01219 0.34 +1.7 1,289,731 + ECD_01219 0.34 -1.5 1,289,968 + ECD_01219 0.60 -0.7 1,290,703 + ECD_01220 0.35 +0.5 1,290,703 + ECD_01220 0.35 +0.8 1,290,705 + ECD_01220 0.35 +0.1 1,290,705 + ECD_01220 0.35 +1.0 1,290,747 + ECD_01220 0.40 +0.2 1,290,896 + ECD_01220 0.54 +0.2 1,290,906 + ECD_01220 0.55 -0.7 1,291,067 + ECD_01220 0.71 -1.0 1,291,072 + ECD_01220 0.72 +1.7 1,291,117 + ECD_01220 0.76 +0.7 1,291,117 + ECD_01220 0.76 +1.1 1,291,135 + ECD_01220 0.78 +0.2 1,291,206 + ECD_01220 0.85 +0.5 1,291,284 + +0.1 1,291,335 + -0.1 1,291,746 + ECD_01221 0.39 +2.1 1,292,100 + ECD_01221 0.74 +0.1 1,292,218 + ECD_01221 0.86 -1.1
Or see this region's nucleotide sequence