Strain Fitness in Escherichia coli BL21 around ECD_01220

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01218 and ECD_01219 are separated by 14 nucleotidesECD_01219 and ECD_01220 are separated by 11 nucleotidesECD_01220 and ECD_01221 overlap by 4 nucleotides ECD_01218: ECD_01218 - oligopeptide ABC transporter permease, at 1,288,491 to 1,289,411 _01218 ECD_01219: ECD_01219 - oligopeptide ABC transporter permease, at 1,289,426 to 1,290,334 _01219 ECD_01220: ECD_01220 - oligopeptide ABC transporter ATPase, at 1,290,346 to 1,291,359 _01220 ECD_01221: ECD_01221 - oligopeptide ABC transporter ATPase, at 1,291,356 to 1,292,360 _01221 Position (kb) 1290 1291 1292Strain fitness (log2 ratio) -1 0 1 2at 1289.377 kb on + strandat 1289.377 kb on + strandat 1289.377 kb on + strandat 1289.524 kb on + strand, within ECD_01219at 1289.731 kb on + strand, within ECD_01219at 1289.731 kb on + strand, within ECD_01219at 1289.968 kb on + strand, within ECD_01219at 1290.703 kb on + strand, within ECD_01220at 1290.703 kb on + strand, within ECD_01220at 1290.705 kb on + strand, within ECD_01220at 1290.705 kb on + strand, within ECD_01220at 1290.747 kb on + strand, within ECD_01220at 1290.896 kb on + strand, within ECD_01220at 1290.906 kb on + strand, within ECD_01220at 1291.067 kb on + strand, within ECD_01220at 1291.072 kb on + strand, within ECD_01220at 1291.117 kb on + strand, within ECD_01220at 1291.117 kb on + strand, within ECD_01220at 1291.135 kb on + strand, within ECD_01220at 1291.206 kb on + strand, within ECD_01220at 1291.284 kb on + strandat 1291.335 kb on + strandat 1291.746 kb on + strand, within ECD_01221at 1292.100 kb on + strand, within ECD_01221at 1292.218 kb on + strand, within ECD_01221

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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1,289,377 + +0.2
1,289,377 + +0.4
1,289,377 + -0.4
1,289,524 + ECD_01219 0.11 +0.6
1,289,731 + ECD_01219 0.34 +1.7
1,289,731 + ECD_01219 0.34 -1.5
1,289,968 + ECD_01219 0.60 -0.7
1,290,703 + ECD_01220 0.35 +0.5
1,290,703 + ECD_01220 0.35 +0.8
1,290,705 + ECD_01220 0.35 +0.1
1,290,705 + ECD_01220 0.35 +1.0
1,290,747 + ECD_01220 0.40 +0.2
1,290,896 + ECD_01220 0.54 +0.2
1,290,906 + ECD_01220 0.55 -0.7
1,291,067 + ECD_01220 0.71 -1.0
1,291,072 + ECD_01220 0.72 +1.7
1,291,117 + ECD_01220 0.76 +0.7
1,291,117 + ECD_01220 0.76 +1.1
1,291,135 + ECD_01220 0.78 +0.2
1,291,206 + ECD_01220 0.85 +0.5
1,291,284 + +0.1
1,291,335 + -0.1
1,291,746 + ECD_01221 0.39 +2.1
1,292,100 + ECD_01221 0.74 +0.1
1,292,218 + ECD_01221 0.86 -1.1

Or see this region's nucleotide sequence