Strain Fitness in Escherichia coli BL21 around ECD_01215

Experiment: Bas50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01214 and ECD_01215 are separated by 301 nucleotidesECD_01215 and ECD_01216 are separated by 476 nucleotides ECD_01214: ECD_01214 - thymidine kinase/deoxyuridine kinase, at 1,281,318 to 1,281,935 _01214 ECD_01215: ECD_01215 - fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase, at 1,282,237 to 1,284,912 _01215 ECD_01216: ECD_01216 - UPF0056 family inner membrane protein, at 1,285,389 to 1,286,036 _01216 Position (kb) 1282 1283 1284 1285Strain fitness (log2 ratio) -3 -2 -1 0 1at 1282.045 kb on + strandat 1282.100 kb on + strandat 1282.329 kb on - strandat 1282.617 kb on - strand, within ECD_01215at 1282.662 kb on - strand, within ECD_01215at 1282.675 kb on - strand, within ECD_01215at 1283.040 kb on - strand, within ECD_01215at 1283.040 kb on - strand, within ECD_01215at 1283.113 kb on - strand, within ECD_01215at 1283.172 kb on - strand, within ECD_01215at 1283.238 kb on - strand, within ECD_01215at 1283.238 kb on - strand, within ECD_01215at 1283.238 kb on - strand, within ECD_01215at 1283.238 kb on - strand, within ECD_01215at 1283.430 kb on - strand, within ECD_01215at 1283.488 kb on - strand, within ECD_01215at 1283.532 kb on - strand, within ECD_01215at 1283.686 kb on - strand, within ECD_01215at 1283.830 kb on - strand, within ECD_01215at 1284.235 kb on - strand, within ECD_01215at 1284.553 kb on - strand, within ECD_01215at 1284.553 kb on - strand, within ECD_01215at 1284.684 kb on - strandat 1284.690 kb on - strandat 1285.557 kb on - strand, within ECD_01216at 1285.607 kb on + strand, within ECD_01216at 1285.694 kb on + strand, within ECD_01216at 1285.829 kb on + strand, within ECD_01216

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
remove
1,282,045 + -0.5
1,282,100 + -1.7
1,282,329 - -1.1
1,282,617 - ECD_01215 0.14 -0.1
1,282,662 - ECD_01215 0.16 +0.2
1,282,675 - ECD_01215 0.16 +0.7
1,283,040 - ECD_01215 0.30 -1.4
1,283,040 - ECD_01215 0.30 +1.5
1,283,113 - ECD_01215 0.33 -0.7
1,283,172 - ECD_01215 0.35 -1.0
1,283,238 - ECD_01215 0.37 -1.5
1,283,238 - ECD_01215 0.37 +0.7
1,283,238 - ECD_01215 0.37 -0.0
1,283,238 - ECD_01215 0.37 -0.6
1,283,430 - ECD_01215 0.45 +0.6
1,283,488 - ECD_01215 0.47 -0.2
1,283,532 - ECD_01215 0.48 -0.0
1,283,686 - ECD_01215 0.54 -0.2
1,283,830 - ECD_01215 0.60 -0.3
1,284,235 - ECD_01215 0.75 -0.9
1,284,553 - ECD_01215 0.87 -1.3
1,284,553 - ECD_01215 0.87 -1.0
1,284,684 - +0.7
1,284,690 - -2.8
1,285,557 - ECD_01216 0.26 -1.0
1,285,607 + ECD_01216 0.34 +0.1
1,285,694 + ECD_01216 0.47 -0.6
1,285,829 + ECD_01216 0.68 +0.2

Or see this region's nucleotide sequence