Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00454 and ECD_00455 are separated by 229 nucleotides ECD_00455 and ECD_00456 are separated by 77 nucleotides ECD_00456 and ECD_00457 are separated by 89 nucleotides
ECD_00454: ECD_00454 - allD operon transcriptional activator, at 500,440 to 501,366
_00454
ECD_00455: ECD_00455 - ureidoglycolate lyase, releasing urea, at 501,596 to 502,078
_00455
ECD_00456: ECD_00456 - glyoxylate-inducible transcriptional repressor of all and gcl operons, at 502,156 to 502,971
_00456
ECD_00457: ECD_00457 - glyoxylate carboligase, at 503,061 to 504,842
_00457
Position (kb) 501
502
503 Strain fitness (log2 ratio) -2
-1
0
1 at 500.706 kb on + strand, within ECD_00454 at 500.895 kb on + strand, within ECD_00454 at 500.896 kb on - strand, within ECD_00454 at 500.949 kb on - strand, within ECD_00454 at 500.949 kb on - strand, within ECD_00454 at 500.975 kb on + strand, within ECD_00454 at 501.173 kb on - strand, within ECD_00454 at 501.290 kb on - strand at 501.576 kb on + strand at 501.582 kb on - strand at 501.582 kb on - strand at 501.609 kb on + strand at 501.634 kb on + strand at 501.947 kb on + strand, within ECD_00455 at 501.955 kb on + strand, within ECD_00455 at 502.049 kb on - strand at 502.099 kb on - strand at 502.108 kb on + strand at 502.109 kb on - strand at 502.123 kb on + strand at 502.151 kb on + strand at 502.151 kb on + strand at 502.152 kb on - strand at 502.155 kb on + strand at 502.252 kb on + strand, within ECD_00456 at 502.395 kb on + strand, within ECD_00456 at 502.395 kb on + strand, within ECD_00456 at 502.397 kb on + strand, within ECD_00456 at 502.397 kb on + strand, within ECD_00456 at 502.397 kb on + strand, within ECD_00456 at 502.397 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.429 kb on + strand, within ECD_00456 at 502.429 kb on + strand, within ECD_00456 at 502.430 kb on - strand, within ECD_00456 at 502.487 kb on + strand, within ECD_00456 at 502.538 kb on + strand, within ECD_00456 at 502.541 kb on + strand, within ECD_00456 at 502.541 kb on + strand, within ECD_00456 at 502.553 kb on + strand, within ECD_00456 at 502.560 kb on + strand, within ECD_00456 at 502.560 kb on + strand, within ECD_00456 at 502.707 kb on + strand, within ECD_00456 at 502.707 kb on + strand, within ECD_00456 at 502.708 kb on - strand, within ECD_00456 at 502.719 kb on + strand, within ECD_00456 at 502.765 kb on + strand, within ECD_00456 at 502.776 kb on + strand, within ECD_00456 at 502.822 kb on + strand, within ECD_00456 at 502.822 kb on + strand, within ECD_00456 at 502.970 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 500,706 + ECD_00454 0.29 +1.4 500,895 + ECD_00454 0.49 -0.2 500,896 - ECD_00454 0.49 -2.5 500,949 - ECD_00454 0.55 -0.8 500,949 - ECD_00454 0.55 -1.4 500,975 + ECD_00454 0.58 -1.1 501,173 - ECD_00454 0.79 -2.5 501,290 - +0.2 501,576 + -0.5 501,582 - -1.0 501,582 - +0.4 501,609 + +0.6 501,634 + +0.4 501,947 + ECD_00455 0.73 +1.0 501,955 + ECD_00455 0.74 +0.5 502,049 - +0.8 502,099 - -2.5 502,108 + +0.6 502,109 - +0.5 502,123 + +1.0 502,151 + -0.5 502,151 + -0.1 502,152 - +1.4 502,155 + -0.3 502,252 + ECD_00456 0.12 -2.7 502,395 + ECD_00456 0.29 -0.6 502,395 + ECD_00456 0.29 -0.2 502,397 + ECD_00456 0.30 -0.7 502,397 + ECD_00456 0.30 -0.2 502,397 + ECD_00456 0.30 +0.3 502,397 + ECD_00456 0.30 -0.7 502,403 + ECD_00456 0.30 +0.5 502,403 + ECD_00456 0.30 -0.1 502,403 + ECD_00456 0.30 -0.2 502,403 + ECD_00456 0.30 -1.4 502,403 + ECD_00456 0.30 -0.7 502,403 + ECD_00456 0.30 -0.2 502,403 + ECD_00456 0.30 -0.1 502,403 + ECD_00456 0.30 +0.8 502,429 + ECD_00456 0.33 -0.1 502,429 + ECD_00456 0.33 -0.3 502,430 - ECD_00456 0.34 +0.1 502,487 + ECD_00456 0.41 -1.3 502,538 + ECD_00456 0.47 +0.1 502,541 + ECD_00456 0.47 -1.1 502,541 + ECD_00456 0.47 -0.4 502,553 + ECD_00456 0.49 +0.1 502,560 + ECD_00456 0.50 -0.7 502,560 + ECD_00456 0.50 +0.1 502,707 + ECD_00456 0.68 -0.8 502,707 + ECD_00456 0.68 +0.3 502,708 - ECD_00456 0.68 +1.0 502,719 + ECD_00456 0.69 -0.3 502,765 + ECD_00456 0.75 -0.6 502,776 + ECD_00456 0.76 -0.2 502,822 + ECD_00456 0.82 -0.1 502,822 + ECD_00456 0.82 +0.2 502,970 - +1.2
Or see this region's nucleotide sequence