Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00398 and ECD_00399 are separated by 152 nucleotides ECD_00399 and ECD_00400 are separated by 29 nucleotides
ECD_00398: ECD_00398 - thiamine pyrimidine pyrophosphate hydrolase; HMP-PP phosphatase, at 436,458 to 437,276
_00398
ECD_00399: ECD_00399 - putative DNA-binding transcriptional regulator, at 437,429 to 437,887
_00399
ECD_00400: ECD_00400 - putative multidrug ABC transporter ATPase, at 437,917 to 439,689
_00400
Position (kb) 437
438 Strain fitness (log2 ratio) -2
-1
0
1 at 436.517 kb on - strand at 436.639 kb on - strand, within ECD_00398 at 436.691 kb on - strand, within ECD_00398 at 436.705 kb on + strand, within ECD_00398 at 436.767 kb on - strand, within ECD_00398 at 436.923 kb on - strand, within ECD_00398 at 436.944 kb on + strand, within ECD_00398 at 436.944 kb on + strand, within ECD_00398 at 437.021 kb on + strand, within ECD_00398 at 437.063 kb on - strand, within ECD_00398 at 437.138 kb on + strand, within ECD_00398 at 437.139 kb on - strand, within ECD_00398 at 437.227 kb on - strand at 437.257 kb on + strand at 437.257 kb on + strand at 437.258 kb on - strand at 437.258 kb on - strand at 437.260 kb on - strand at 437.736 kb on - strand, within ECD_00399 at 437.741 kb on + strand, within ECD_00399 at 437.742 kb on - strand, within ECD_00399 at 437.789 kb on + strand, within ECD_00399 at 437.861 kb on + strand at 437.936 kb on + strand at 437.936 kb on + strand at 437.936 kb on + strand at 437.968 kb on + strand at 437.969 kb on - strand at 438.036 kb on + strand at 438.069 kb on + strand at 438.140 kb on - strand, within ECD_00400 at 438.215 kb on + strand, within ECD_00400 at 438.215 kb on + strand, within ECD_00400 at 438.401 kb on + strand, within ECD_00400 at 438.504 kb on + strand, within ECD_00400 at 438.603 kb on + strand, within ECD_00400 at 438.661 kb on + strand, within ECD_00400 at 438.661 kb on + strand, within ECD_00400 at 438.662 kb on - strand, within ECD_00400 at 438.763 kb on + strand, within ECD_00400 at 438.763 kb on + strand, within ECD_00400 at 438.763 kb on + strand, within ECD_00400 at 438.767 kb on + strand, within ECD_00400 at 438.828 kb on + strand, within ECD_00400
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 436,517 - -0.1 436,639 - ECD_00398 0.22 +0.6 436,691 - ECD_00398 0.28 +0.2 436,705 + ECD_00398 0.30 -0.7 436,767 - ECD_00398 0.38 +1.7 436,923 - ECD_00398 0.57 +1.1 436,944 + ECD_00398 0.59 +1.0 436,944 + ECD_00398 0.59 -0.7 437,021 + ECD_00398 0.69 -1.0 437,063 - ECD_00398 0.74 +0.0 437,138 + ECD_00398 0.83 -0.2 437,139 - ECD_00398 0.83 -0.2 437,227 - -0.3 437,257 + -0.7 437,257 + -2.6 437,258 - -0.3 437,258 - -1.4 437,260 - +0.3 437,736 - ECD_00399 0.67 -0.3 437,741 + ECD_00399 0.68 -2.4 437,742 - ECD_00399 0.68 -1.2 437,789 + ECD_00399 0.78 -0.5 437,861 + +0.1 437,936 + +0.2 437,936 + -1.2 437,936 + -0.3 437,968 + -0.3 437,969 - -0.6 438,036 + +1.2 438,069 + +0.6 438,140 - ECD_00400 0.13 +0.5 438,215 + ECD_00400 0.17 -1.2 438,215 + ECD_00400 0.17 +0.6 438,401 + ECD_00400 0.27 -0.4 438,504 + ECD_00400 0.33 +1.3 438,603 + ECD_00400 0.39 +0.2 438,661 + ECD_00400 0.42 +1.0 438,661 + ECD_00400 0.42 +0.3 438,662 - ECD_00400 0.42 -0.7 438,763 + ECD_00400 0.48 +0.2 438,763 + ECD_00400 0.48 +0.4 438,763 + ECD_00400 0.48 +0.3 438,767 + ECD_00400 0.48 +0.2 438,828 + ECD_00400 0.51 -1.2
Or see this region's nucleotide sequence