Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00109 and ECD_00110 overlap by 4 nucleotides ECD_00110 and ECD_00111 are separated by 42 nucleotides ECD_00111 and ECD_00112 are separated by 540 nucleotides
ECD_00109: ECD_00109 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase, at 121,538 to 122,089
_00109
ECD_00110: ECD_00110 - ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation, at 122,086 to 122,940
_00110
ECD_00111: ECD_00111 - aromatic amino acid transporter, at 122,983 to 124,356
_00111
ECD_00112: ECD_00112 - pyruvate dehydrogenase complex repressor; autorepressor, at 124,897 to 125,661
_00112
Position (kb)
122
123
124
125 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 122.005 kb on + strand, within ECD_00109 at 122.006 kb on - strand, within ECD_00109 at 122.093 kb on + strand at 122.098 kb on - strand at 122.098 kb on - strand at 122.229 kb on + strand, within ECD_00110 at 122.230 kb on - strand, within ECD_00110 at 122.259 kb on - strand, within ECD_00110 at 122.276 kb on + strand, within ECD_00110 at 122.340 kb on + strand, within ECD_00110 at 122.341 kb on - strand, within ECD_00110 at 122.365 kb on + strand, within ECD_00110 at 122.365 kb on + strand, within ECD_00110 at 122.365 kb on + strand, within ECD_00110 at 122.366 kb on - strand, within ECD_00110 at 122.366 kb on - strand, within ECD_00110 at 122.366 kb on - strand, within ECD_00110 at 122.366 kb on - strand, within ECD_00110 at 122.385 kb on + strand, within ECD_00110 at 122.385 kb on + strand, within ECD_00110 at 122.503 kb on - strand, within ECD_00110 at 122.669 kb on + strand, within ECD_00110 at 122.705 kb on + strand, within ECD_00110 at 122.705 kb on + strand, within ECD_00110 at 122.706 kb on - strand, within ECD_00110 at 122.706 kb on - strand, within ECD_00110 at 122.707 kb on + strand, within ECD_00110 at 122.707 kb on + strand, within ECD_00110 at 122.707 kb on + strand, within ECD_00110 at 122.707 kb on + strand, within ECD_00110 at 122.708 kb on - strand, within ECD_00110 at 122.708 kb on - strand, within ECD_00110 at 122.782 kb on + strand, within ECD_00110 at 122.945 kb on + strand at 122.962 kb on - strand at 122.976 kb on - strand at 123.034 kb on - strand at 123.037 kb on + strand at 123.037 kb on + strand at 123.066 kb on - strand at 123.153 kb on - strand, within ECD_00111 at 123.244 kb on + strand, within ECD_00111 at 123.244 kb on + strand, within ECD_00111 at 123.302 kb on + strand, within ECD_00111 at 123.302 kb on + strand, within ECD_00111 at 123.303 kb on - strand, within ECD_00111 at 123.303 kb on - strand, within ECD_00111 at 123.303 kb on - strand, within ECD_00111 at 123.307 kb on - strand, within ECD_00111 at 123.351 kb on + strand, within ECD_00111 at 123.356 kb on - strand, within ECD_00111 at 123.429 kb on + strand, within ECD_00111 at 123.444 kb on - strand, within ECD_00111 at 123.446 kb on - strand, within ECD_00111 at 123.446 kb on - strand, within ECD_00111 at 123.458 kb on + strand, within ECD_00111 at 123.458 kb on + strand, within ECD_00111 at 123.459 kb on - strand, within ECD_00111 at 123.482 kb on - strand, within ECD_00111 at 123.611 kb on + strand, within ECD_00111 at 123.612 kb on - strand, within ECD_00111 at 123.629 kb on + strand, within ECD_00111 at 123.630 kb on - strand, within ECD_00111 at 123.730 kb on - strand, within ECD_00111 at 123.833 kb on - strand, within ECD_00111 at 124.007 kb on + strand, within ECD_00111 at 124.008 kb on - strand, within ECD_00111 at 124.012 kb on - strand, within ECD_00111 at 124.235 kb on - strand at 124.235 kb on - strand at 124.235 kb on - strand at 124.291 kb on - strand at 124.299 kb on + strand at 124.389 kb on - strand at 124.708 kb on + strand at 124.728 kb on - strand at 124.731 kb on + strand at 124.749 kb on + strand at 124.750 kb on - strand at 124.751 kb on + strand at 124.883 kb on + strand at 124.903 kb on + strand at 124.903 kb on + strand at 125.188 kb on + strand, within ECD_00112 at 125.188 kb on + strand, within ECD_00112 at 125.188 kb on + strand, within ECD_00112 at 125.223 kb on + strand, within ECD_00112 at 125.233 kb on + strand, within ECD_00112 at 125.236 kb on + strand, within ECD_00112
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 122,005 + ECD_00109 0.85 -0.5 122,006 - ECD_00109 0.85 -0.9 122,093 + -0.2 122,098 - +0.6 122,098 - -0.7 122,229 + ECD_00110 0.17 +0.6 122,230 - ECD_00110 0.17 -1.6 122,259 - ECD_00110 0.20 -0.1 122,276 + ECD_00110 0.22 -0.5 122,340 + ECD_00110 0.30 +0.2 122,341 - ECD_00110 0.30 -1.5 122,365 + ECD_00110 0.33 +2.0 122,365 + ECD_00110 0.33 -0.5 122,365 + ECD_00110 0.33 +0.7 122,366 - ECD_00110 0.33 -2.6 122,366 - ECD_00110 0.33 -0.7 122,366 - ECD_00110 0.33 -0.2 122,366 - ECD_00110 0.33 +0.6 122,385 + ECD_00110 0.35 +0.1 122,385 + ECD_00110 0.35 +1.5 122,503 - ECD_00110 0.49 -1.9 122,669 + ECD_00110 0.68 +1.1 122,705 + ECD_00110 0.72 -0.3 122,705 + ECD_00110 0.72 -0.2 122,706 - ECD_00110 0.73 +0.8 122,706 - ECD_00110 0.73 -1.6 122,707 + ECD_00110 0.73 +0.9 122,707 + ECD_00110 0.73 -0.1 122,707 + ECD_00110 0.73 -1.6 122,707 + ECD_00110 0.73 +1.2 122,708 - ECD_00110 0.73 -0.5 122,708 - ECD_00110 0.73 +0.5 122,782 + ECD_00110 0.81 -0.0 122,945 + +0.1 122,962 - +0.4 122,976 - +1.0 123,034 - -0.3 123,037 + +0.4 123,037 + +1.1 123,066 - -0.4 123,153 - ECD_00111 0.12 -0.2 123,244 + ECD_00111 0.19 +0.1 123,244 + ECD_00111 0.19 -0.8 123,302 + ECD_00111 0.23 -0.7 123,302 + ECD_00111 0.23 +0.4 123,303 - ECD_00111 0.23 -0.1 123,303 - ECD_00111 0.23 -0.6 123,303 - ECD_00111 0.23 -0.4 123,307 - ECD_00111 0.24 +0.3 123,351 + ECD_00111 0.27 +0.2 123,356 - ECD_00111 0.27 -0.9 123,429 + ECD_00111 0.32 -0.5 123,444 - ECD_00111 0.34 -0.1 123,446 - ECD_00111 0.34 -0.6 123,446 - ECD_00111 0.34 +0.5 123,458 + ECD_00111 0.35 -0.8 123,458 + ECD_00111 0.35 -0.1 123,459 - ECD_00111 0.35 +0.1 123,482 - ECD_00111 0.36 -0.2 123,611 + ECD_00111 0.46 -1.1 123,612 - ECD_00111 0.46 +0.0 123,629 + ECD_00111 0.47 -0.6 123,630 - ECD_00111 0.47 -0.3 123,730 - ECD_00111 0.54 +1.1 123,833 - ECD_00111 0.62 +1.0 124,007 + ECD_00111 0.75 -0.2 124,008 - ECD_00111 0.75 -0.5 124,012 - ECD_00111 0.75 +0.2 124,235 - -0.7 124,235 - -1.0 124,235 - -0.2 124,291 - -1.5 124,299 + +0.8 124,389 - +0.2 124,708 + -0.1 124,728 - +1.2 124,731 + -0.3 124,749 + -0.1 124,750 - +0.4 124,751 + -0.6 124,883 + -0.4 124,903 + -0.5 124,903 + +0.6 125,188 + ECD_00112 0.38 +0.4 125,188 + ECD_00112 0.38 -1.1 125,188 + ECD_00112 0.38 -0.1 125,223 + ECD_00112 0.43 -0.5 125,233 + ECD_00112 0.44 +0.1 125,236 + ECD_00112 0.44 -0.5
Or see this region's nucleotide sequence