Strain Fitness in Escherichia coli BL21 around ECD_03218

Experiment: Bas42

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03216 and ECD_03217 overlap by 4 nucleotidesECD_03217 and ECD_03218 are separated by 125 nucleotidesECD_03218 and ECD_03219 are separated by 18 nucleotides ECD_03216: ECD_03216 - nitrite reductase, large subunit, NAD(P)H-binding, at 3,353,612 to 3,356,155 _03216 ECD_03217: ECD_03217 - nitrite reductase (NADH) small subunit, at 3,356,152 to 3,356,478 _03217 ECD_03218: ECD_03218 - nitrite transporter, at 3,356,604 to 3,357,410 _03218 ECD_03219: ECD_03219 - fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase, at 3,357,429 to 3,358,802 _03219 Position (kb) 3356 3357 3358Strain fitness (log2 ratio) -2 -1 0 1 2at 3355.681 kb on + strand, within ECD_03216at 3355.724 kb on + strand, within ECD_03216at 3355.829 kb on + strand, within ECD_03216at 3355.829 kb on + strand, within ECD_03216at 3355.829 kb on + strand, within ECD_03216at 3355.830 kb on - strand, within ECD_03216at 3355.830 kb on - strand, within ECD_03216at 3355.858 kb on + strand, within ECD_03216at 3356.009 kb on - strandat 3356.122 kb on + strandat 3356.122 kb on + strandat 3356.123 kb on - strandat 3356.219 kb on + strand, within ECD_03217at 3356.219 kb on + strand, within ECD_03217at 3356.219 kb on + strand, within ECD_03217at 3356.219 kb on + strand, within ECD_03217at 3356.220 kb on - strand, within ECD_03217at 3356.525 kb on - strandat 3356.528 kb on - strandat 3356.538 kb on - strandat 3356.540 kb on - strandat 3356.597 kb on + strandat 3356.712 kb on + strand, within ECD_03218at 3356.713 kb on - strand, within ECD_03218at 3356.970 kb on + strand, within ECD_03218at 3356.970 kb on + strand, within ECD_03218at 3356.970 kb on + strand, within ECD_03218at 3356.970 kb on + strand, within ECD_03218at 3356.970 kb on + strand, within ECD_03218at 3356.971 kb on - strand, within ECD_03218at 3356.971 kb on - strand, within ECD_03218at 3356.971 kb on - strand, within ECD_03218at 3356.971 kb on - strand, within ECD_03218at 3356.971 kb on - strand, within ECD_03218at 3356.973 kb on - strand, within ECD_03218at 3357.035 kb on + strand, within ECD_03218at 3357.149 kb on + strand, within ECD_03218at 3357.173 kb on + strand, within ECD_03218at 3357.198 kb on - strand, within ECD_03218at 3357.198 kb on - strand, within ECD_03218at 3357.302 kb on + strand, within ECD_03218at 3357.303 kb on - strand, within ECD_03218at 3357.303 kb on - strand, within ECD_03218at 3357.342 kb on + strandat 3357.342 kb on + strandat 3357.343 kb on - strandat 3357.412 kb on + strandat 3357.412 kb on + strandat 3357.412 kb on + strandat 3357.412 kb on + strandat 3357.413 kb on - strandat 3357.413 kb on - strandat 3357.415 kb on + strandat 3357.415 kb on + strandat 3357.426 kb on + strandat 3357.443 kb on + strandat 3357.443 kb on + strandat 3357.556 kb on + strandat 3357.761 kb on + strand, within ECD_03219at 3357.762 kb on - strand, within ECD_03219at 3357.764 kb on + strand, within ECD_03219at 3358.048 kb on + strand, within ECD_03219

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas42
remove
3,355,681 + ECD_03216 0.81 -0.4
3,355,724 + ECD_03216 0.83 +0.9
3,355,829 + ECD_03216 0.87 -1.1
3,355,829 + ECD_03216 0.87 +1.3
3,355,829 + ECD_03216 0.87 -0.5
3,355,830 - ECD_03216 0.87 +0.3
3,355,830 - ECD_03216 0.87 -1.4
3,355,858 + ECD_03216 0.88 +1.5
3,356,009 - -1.2
3,356,122 + +0.5
3,356,122 + +1.2
3,356,123 - +0.5
3,356,219 + ECD_03217 0.20 +1.5
3,356,219 + ECD_03217 0.20 -1.2
3,356,219 + ECD_03217 0.20 -2.2
3,356,219 + ECD_03217 0.20 -1.9
3,356,220 - ECD_03217 0.21 -1.2
3,356,525 - +2.0
3,356,528 - +2.2
3,356,538 - +0.0
3,356,540 - +0.1
3,356,597 + +0.6
3,356,712 + ECD_03218 0.13 +1.4
3,356,713 - ECD_03218 0.14 +1.3
3,356,970 + ECD_03218 0.45 +1.5
3,356,970 + ECD_03218 0.45 -0.7
3,356,970 + ECD_03218 0.45 +0.6
3,356,970 + ECD_03218 0.45 -1.4
3,356,970 + ECD_03218 0.45 +0.4
3,356,971 - ECD_03218 0.45 +0.9
3,356,971 - ECD_03218 0.45 +1.4
3,356,971 - ECD_03218 0.45 -0.9
3,356,971 - ECD_03218 0.45 -1.9
3,356,971 - ECD_03218 0.45 +0.3
3,356,973 - ECD_03218 0.46 +2.0
3,357,035 + ECD_03218 0.53 -0.8
3,357,149 + ECD_03218 0.68 -1.2
3,357,173 + ECD_03218 0.71 +0.5
3,357,198 - ECD_03218 0.74 +0.8
3,357,198 - ECD_03218 0.74 -2.5
3,357,302 + ECD_03218 0.86 +0.0
3,357,303 - ECD_03218 0.87 -0.1
3,357,303 - ECD_03218 0.87 +0.4
3,357,342 + -0.3
3,357,342 + -0.5
3,357,343 - +0.0
3,357,412 + -0.5
3,357,412 + +0.5
3,357,412 + -0.7
3,357,412 + +0.3
3,357,413 - +0.5
3,357,413 - -2.6
3,357,415 + -2.0
3,357,415 + +0.7
3,357,426 + -2.1
3,357,443 + +1.9
3,357,443 + -1.5
3,357,556 + +1.5
3,357,761 + ECD_03219 0.24 -0.8
3,357,762 - ECD_03219 0.24 -0.9
3,357,764 + ECD_03219 0.24 +0.3
3,358,048 + ECD_03219 0.45 +0.2

Or see this region's nucleotide sequence