Strain Fitness in Escherichia coli BL21 around ECD_02107

Experiment: Bas42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02106 and ECD_02107 are separated by 81 nucleotidesECD_02107 and ECD_02108 are separated by 0 nucleotides ECD_02106: ECD_02106 - resistance protein for phages lambda and N4, putative membrane-anchored cyclic-di-GMP phosphodiesterase, at 2,165,575 to 2,167,131 _02106 ECD_02107: ECD_02107 - microcin C ABC transporter periplasmic binding protein, at 2,167,213 to 2,169,027 _02107 ECD_02108: ECD_02108 - microcin C ABC transporter permease, at 2,169,028 to 2,170,122 _02108 Position (kb) 2167 2168 2169 2170Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2166.253 kb on + strand, within ECD_02106at 2166.353 kb on + strand, within ECD_02106at 2166.358 kb on - strand, within ECD_02106at 2166.817 kb on - strand, within ECD_02106at 2166.854 kb on - strand, within ECD_02106at 2166.938 kb on + strand, within ECD_02106at 2166.938 kb on + strand, within ECD_02106at 2167.129 kb on + strandat 2167.140 kb on + strandat 2167.288 kb on + strandat 2167.505 kb on - strand, within ECD_02107at 2167.535 kb on - strand, within ECD_02107at 2167.535 kb on - strand, within ECD_02107at 2167.620 kb on - strand, within ECD_02107at 2168.065 kb on - strand, within ECD_02107at 2168.193 kb on + strand, within ECD_02107at 2168.538 kb on + strand, within ECD_02107at 2168.737 kb on + strand, within ECD_02107at 2168.937 kb on - strandat 2168.974 kb on + strandat 2169.026 kb on - strandat 2169.084 kb on + strandat 2169.235 kb on - strand, within ECD_02108at 2169.335 kb on - strand, within ECD_02108at 2169.466 kb on - strand, within ECD_02108at 2169.510 kb on + strand, within ECD_02108at 2169.795 kb on + strand, within ECD_02108at 2169.830 kb on + strand, within ECD_02108

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas42
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2,166,253 + ECD_02106 0.44 -1.0
2,166,353 + ECD_02106 0.50 +0.5
2,166,358 - ECD_02106 0.50 +3.2
2,166,817 - ECD_02106 0.80 +1.8
2,166,854 - ECD_02106 0.82 +1.8
2,166,938 + ECD_02106 0.88 -1.1
2,166,938 + ECD_02106 0.88 -0.5
2,167,129 + +2.8
2,167,140 + -0.8
2,167,288 + -0.6
2,167,505 - ECD_02107 0.16 -0.6
2,167,535 - ECD_02107 0.18 -0.7
2,167,535 - ECD_02107 0.18 -1.3
2,167,620 - ECD_02107 0.22 +0.2
2,168,065 - ECD_02107 0.47 +2.2
2,168,193 + ECD_02107 0.54 -0.9
2,168,538 + ECD_02107 0.73 +2.5
2,168,737 + ECD_02107 0.84 -1.8
2,168,937 - +0.5
2,168,974 + -0.1
2,169,026 - -2.4
2,169,084 + -0.5
2,169,235 - ECD_02108 0.19 -1.2
2,169,335 - ECD_02108 0.28 +0.3
2,169,466 - ECD_02108 0.40 +1.8
2,169,510 + ECD_02108 0.44 +1.4
2,169,795 + ECD_02108 0.70 -2.2
2,169,830 + ECD_02108 0.73 -1.8

Or see this region's nucleotide sequence