Experiment: Bas42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02106 and ECD_02107 are separated by 81 nucleotides ECD_02107 and ECD_02108 are separated by 0 nucleotides
ECD_02106: ECD_02106 - resistance protein for phages lambda and N4, putative membrane-anchored cyclic-di-GMP phosphodiesterase, at 2,165,575 to 2,167,131
_02106
ECD_02107: ECD_02107 - microcin C ABC transporter periplasmic binding protein, at 2,167,213 to 2,169,027
_02107
ECD_02108: ECD_02108 - microcin C ABC transporter permease, at 2,169,028 to 2,170,122
_02108
Position (kb)
2167
2168
2169
2170 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2166.253 kb on + strand, within ECD_02106 at 2166.353 kb on + strand, within ECD_02106 at 2166.358 kb on - strand, within ECD_02106 at 2166.817 kb on - strand, within ECD_02106 at 2166.854 kb on - strand, within ECD_02106 at 2166.938 kb on + strand, within ECD_02106 at 2166.938 kb on + strand, within ECD_02106 at 2167.129 kb on + strand at 2167.140 kb on + strand at 2167.288 kb on + strand at 2167.505 kb on - strand, within ECD_02107 at 2167.535 kb on - strand, within ECD_02107 at 2167.535 kb on - strand, within ECD_02107 at 2167.620 kb on - strand, within ECD_02107 at 2168.065 kb on - strand, within ECD_02107 at 2168.193 kb on + strand, within ECD_02107 at 2168.538 kb on + strand, within ECD_02107 at 2168.737 kb on + strand, within ECD_02107 at 2168.937 kb on - strand at 2168.974 kb on + strand at 2169.026 kb on - strand at 2169.084 kb on + strand at 2169.235 kb on - strand, within ECD_02108 at 2169.335 kb on - strand, within ECD_02108 at 2169.466 kb on - strand, within ECD_02108 at 2169.510 kb on + strand, within ECD_02108 at 2169.795 kb on + strand, within ECD_02108 at 2169.830 kb on + strand, within ECD_02108
Per-strain Table
Position Strand Gene LocusTag Fraction Bas42 remove 2,166,253 + ECD_02106 0.44 -1.0 2,166,353 + ECD_02106 0.50 +0.5 2,166,358 - ECD_02106 0.50 +3.2 2,166,817 - ECD_02106 0.80 +1.8 2,166,854 - ECD_02106 0.82 +1.8 2,166,938 + ECD_02106 0.88 -1.1 2,166,938 + ECD_02106 0.88 -0.5 2,167,129 + +2.8 2,167,140 + -0.8 2,167,288 + -0.6 2,167,505 - ECD_02107 0.16 -0.6 2,167,535 - ECD_02107 0.18 -0.7 2,167,535 - ECD_02107 0.18 -1.3 2,167,620 - ECD_02107 0.22 +0.2 2,168,065 - ECD_02107 0.47 +2.2 2,168,193 + ECD_02107 0.54 -0.9 2,168,538 + ECD_02107 0.73 +2.5 2,168,737 + ECD_02107 0.84 -1.8 2,168,937 - +0.5 2,168,974 + -0.1 2,169,026 - -2.4 2,169,084 + -0.5 2,169,235 - ECD_02108 0.19 -1.2 2,169,335 - ECD_02108 0.28 +0.3 2,169,466 - ECD_02108 0.40 +1.8 2,169,510 + ECD_02108 0.44 +1.4 2,169,795 + ECD_02108 0.70 -2.2 2,169,830 + ECD_02108 0.73 -1.8
Or see this region's nucleotide sequence