Experiment: Bas42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02066 and ECD_02067 are separated by 129 nucleotides ECD_02067 and ECD_02068 are separated by 52 nucleotides ECD_02068 and ECD_04336 are separated by 295 nucleotides ECD_04336 and ECD_02069 are separated by 372 nucleotides
ECD_02066: ECD_02066 - DedA family inner membrane protein, at 2,120,705 to 2,121,283
_02066
ECD_02067: ECD_02067 - putative oxidoreductase, at 2,121,413 to 2,122,174
_02067
ECD_02068: ECD_02068 - putative outer membrane protein, at 2,122,227 to 2,123,591
_02068
ECD_04336: ECD_04336 - small membrane protein, at 2,123,887 to 2,123,970
_04336
ECD_02069: ECD_02069 - tRNA-dihydrouridine synthase C, at 2,124,343 to 2,125,290
_02069
Position (kb)
2122
2123
2124 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2121.718 kb on - strand, within ECD_02067 at 2121.753 kb on - strand, within ECD_02067 at 2122.031 kb on - strand, within ECD_02067 at 2122.031 kb on - strand, within ECD_02067 at 2122.085 kb on - strand, within ECD_02067 at 2122.205 kb on + strand at 2122.205 kb on + strand at 2122.210 kb on - strand at 2122.212 kb on - strand at 2122.212 kb on - strand at 2122.296 kb on + strand at 2122.396 kb on - strand, within ECD_02068 at 2122.396 kb on - strand, within ECD_02068 at 2122.396 kb on - strand, within ECD_02068 at 2122.514 kb on - strand, within ECD_02068 at 2122.647 kb on + strand, within ECD_02068 at 2122.697 kb on - strand, within ECD_02068 at 2122.728 kb on + strand, within ECD_02068 at 2122.983 kb on - strand, within ECD_02068 at 2122.999 kb on - strand, within ECD_02068 at 2123.298 kb on + strand, within ECD_02068 at 2123.299 kb on - strand, within ECD_02068 at 2123.451 kb on - strand, within ECD_02068 at 2123.451 kb on - strand, within ECD_02068 at 2123.479 kb on + strand at 2124.057 kb on - strand at 2124.489 kb on - strand, within ECD_02069 at 2124.491 kb on - strand, within ECD_02069
Per-strain Table
Position Strand Gene LocusTag Fraction Bas42 remove 2,121,718 - ECD_02067 0.40 -1.2 2,121,753 - ECD_02067 0.45 +1.4 2,122,031 - ECD_02067 0.81 -1.2 2,122,031 - ECD_02067 0.81 -0.1 2,122,085 - ECD_02067 0.88 -0.6 2,122,205 + +0.6 2,122,205 + -0.3 2,122,210 - +0.7 2,122,212 - -0.0 2,122,212 - -0.5 2,122,296 + -0.2 2,122,396 - ECD_02068 0.12 +0.4 2,122,396 - ECD_02068 0.12 -2.3 2,122,396 - ECD_02068 0.12 -2.4 2,122,514 - ECD_02068 0.21 +1.0 2,122,647 + ECD_02068 0.31 -0.9 2,122,697 - ECD_02068 0.34 -2.0 2,122,728 + ECD_02068 0.37 +0.0 2,122,983 - ECD_02068 0.55 -0.9 2,122,999 - ECD_02068 0.57 -1.2 2,123,298 + ECD_02068 0.78 +2.0 2,123,299 - ECD_02068 0.79 +0.9 2,123,451 - ECD_02068 0.90 -0.6 2,123,451 - ECD_02068 0.90 -1.8 2,123,479 + -1.0 2,124,057 - -0.3 2,124,489 - ECD_02069 0.15 -0.5 2,124,491 - ECD_02069 0.16 +0.3
Or see this region's nucleotide sequence