Strain Fitness in Escherichia coli BL21 around ECD_02068

Experiment: Bas42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02066 and ECD_02067 are separated by 129 nucleotidesECD_02067 and ECD_02068 are separated by 52 nucleotidesECD_02068 and ECD_04336 are separated by 295 nucleotidesECD_04336 and ECD_02069 are separated by 372 nucleotides ECD_02066: ECD_02066 - DedA family inner membrane protein, at 2,120,705 to 2,121,283 _02066 ECD_02067: ECD_02067 - putative oxidoreductase, at 2,121,413 to 2,122,174 _02067 ECD_02068: ECD_02068 - putative outer membrane protein, at 2,122,227 to 2,123,591 _02068 ECD_04336: ECD_04336 - small membrane protein, at 2,123,887 to 2,123,970 _04336 ECD_02069: ECD_02069 - tRNA-dihydrouridine synthase C, at 2,124,343 to 2,125,290 _02069 Position (kb) 2122 2123 2124Strain fitness (log2 ratio) -2 -1 0 1 2at 2121.718 kb on - strand, within ECD_02067at 2121.753 kb on - strand, within ECD_02067at 2122.031 kb on - strand, within ECD_02067at 2122.031 kb on - strand, within ECD_02067at 2122.085 kb on - strand, within ECD_02067at 2122.205 kb on + strandat 2122.205 kb on + strandat 2122.210 kb on - strandat 2122.212 kb on - strandat 2122.212 kb on - strandat 2122.296 kb on + strandat 2122.396 kb on - strand, within ECD_02068at 2122.396 kb on - strand, within ECD_02068at 2122.396 kb on - strand, within ECD_02068at 2122.514 kb on - strand, within ECD_02068at 2122.647 kb on + strand, within ECD_02068at 2122.697 kb on - strand, within ECD_02068at 2122.728 kb on + strand, within ECD_02068at 2122.983 kb on - strand, within ECD_02068at 2122.999 kb on - strand, within ECD_02068at 2123.298 kb on + strand, within ECD_02068at 2123.299 kb on - strand, within ECD_02068at 2123.451 kb on - strand, within ECD_02068at 2123.451 kb on - strand, within ECD_02068at 2123.479 kb on + strandat 2124.057 kb on - strandat 2124.489 kb on - strand, within ECD_02069at 2124.491 kb on - strand, within ECD_02069

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas42
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2,121,718 - ECD_02067 0.40 -1.2
2,121,753 - ECD_02067 0.45 +1.4
2,122,031 - ECD_02067 0.81 -1.2
2,122,031 - ECD_02067 0.81 -0.1
2,122,085 - ECD_02067 0.88 -0.6
2,122,205 + +0.6
2,122,205 + -0.3
2,122,210 - +0.7
2,122,212 - -0.0
2,122,212 - -0.5
2,122,296 + -0.2
2,122,396 - ECD_02068 0.12 +0.4
2,122,396 - ECD_02068 0.12 -2.3
2,122,396 - ECD_02068 0.12 -2.4
2,122,514 - ECD_02068 0.21 +1.0
2,122,647 + ECD_02068 0.31 -0.9
2,122,697 - ECD_02068 0.34 -2.0
2,122,728 + ECD_02068 0.37 +0.0
2,122,983 - ECD_02068 0.55 -0.9
2,122,999 - ECD_02068 0.57 -1.2
2,123,298 + ECD_02068 0.78 +2.0
2,123,299 - ECD_02068 0.79 +0.9
2,123,451 - ECD_02068 0.90 -0.6
2,123,451 - ECD_02068 0.90 -1.8
2,123,479 + -1.0
2,124,057 - -0.3
2,124,489 - ECD_02069 0.15 -0.5
2,124,491 - ECD_02069 0.16 +0.3

Or see this region's nucleotide sequence