Experiment: Bas42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01431 and ECD_01432 are separated by 288 nucleotides ECD_01432 and ECD_01433 are separated by 12 nucleotides ECD_01433 and ECD_01434 overlap by 8 nucleotides
ECD_01431: ECD_01431 - aromatic amino acid exporter, at 1,501,968 to 1,502,792
_01431
ECD_01432: ECD_01432 - formate dehydrogenase-N, alpha subunit, nitrate-inducible, at 1,503,081 to 1,506,128
_01432
ECD_01433: ECD_01433 - formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible, at 1,506,141 to 1,507,025
_01433
ECD_01434: ECD_01434 - formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible, at 1,507,018 to 1,507,671
_01434
Position (kb)
1503
1504
1505
1506
1507 Strain fitness (log2 ratio)
-1
0
1 at 1503.234 kb on + strand at 1503.417 kb on + strand, within ECD_01432 at 1503.452 kb on + strand, within ECD_01432 at 1503.560 kb on + strand, within ECD_01432 at 1503.993 kb on + strand, within ECD_01432 at 1504.698 kb on + strand, within ECD_01432 at 1504.955 kb on + strand, within ECD_01432 at 1504.955 kb on + strand, within ECD_01432 at 1505.158 kb on + strand, within ECD_01432 at 1505.369 kb on + strand, within ECD_01432 at 1505.415 kb on + strand, within ECD_01432 at 1505.763 kb on + strand, within ECD_01432 at 1505.876 kb on + strand at 1506.612 kb on + strand, within ECD_01433
Per-strain Table
Position Strand Gene LocusTag Fraction Bas42 remove 1,503,234 + +0.1 1,503,417 + ECD_01432 0.11 +1.6 1,503,452 + ECD_01432 0.12 -0.9 1,503,560 + ECD_01432 0.16 -0.1 1,503,993 + ECD_01432 0.30 -0.9 1,504,698 + ECD_01432 0.53 +0.7 1,504,955 + ECD_01432 0.61 -0.1 1,504,955 + ECD_01432 0.61 -0.1 1,505,158 + ECD_01432 0.68 -0.4 1,505,369 + ECD_01432 0.75 -1.2 1,505,415 + ECD_01432 0.77 -0.3 1,505,763 + ECD_01432 0.88 -0.4 1,505,876 + -0.7 1,506,612 + ECD_01433 0.53 +1.0
Or see this region's nucleotide sequence