Experiment: Bas42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00846 and ECD_00847 overlap by 29 nucleotides ECD_00847 and ECD_00848 overlap by 1 nucleotides ECD_00848 and ECD_00849 are separated by 30 nucleotides ECD_00849 and ECD_00850 overlap by 4 nucleotides ECD_00850 and ECD_00851 are separated by 57 nucleotides
ECD_00846: ECD_00846 - hypothetical protein, at 890,072 to 890,509
_00846
ECD_00847: ECD_00847 - e14 prophage; putative tail fiber assembly protein, at 890,481 to 891,083
_00847
ECD_00848: ECD_00848 - bacteriophage tail fiber protein, at 891,083 to 891,622
_00848
ECD_00849: ECD_00849 - putative DNA-invertase, at 891,653 to 891,928
_00849
ECD_00850: ECD_00850 - putative regulator of late gene expression, at 891,925 to 892,293
_00850
ECD_00851: ECD_00851 - prophage P2 OGR-like protein, at 892,351 to 892,602
_00851
Position (kb) 891
892 Strain fitness (log2 ratio) -2
-1
0
1
2 at 890.225 kb on - strand, within ECD_00846 at 890.225 kb on - strand, within ECD_00846 at 890.319 kb on + strand, within ECD_00846 at 890.320 kb on - strand, within ECD_00846 at 890.339 kb on + strand, within ECD_00846 at 890.471 kb on - strand at 890.554 kb on + strand, within ECD_00847 at 890.571 kb on - strand, within ECD_00847 at 890.633 kb on + strand, within ECD_00847 at 890.715 kb on - strand, within ECD_00847 at 890.715 kb on - strand, within ECD_00847 at 890.715 kb on - strand, within ECD_00847 at 890.835 kb on - strand, within ECD_00847 at 891.021 kb on - strand, within ECD_00847 at 891.102 kb on + strand at 891.145 kb on - strand, within ECD_00848 at 891.363 kb on - strand, within ECD_00848 at 891.386 kb on - strand, within ECD_00848 at 891.766 kb on + strand, within ECD_00849 at 891.807 kb on + strand, within ECD_00849 at 891.883 kb on - strand, within ECD_00849 at 891.933 kb on + strand at 892.030 kb on + strand, within ECD_00850 at 892.109 kb on + strand, within ECD_00850 at 892.138 kb on + strand, within ECD_00850 at 892.200 kb on + strand, within ECD_00850 at 892.201 kb on - strand, within ECD_00850 at 892.218 kb on + strand, within ECD_00850 at 892.463 kb on - strand, within ECD_00851
Per-strain Table
Position Strand Gene LocusTag Fraction Bas42 remove 890,225 - ECD_00846 0.35 +1.3 890,225 - ECD_00846 0.35 -0.5 890,319 + ECD_00846 0.56 +0.0 890,320 - ECD_00846 0.57 +0.7 890,339 + ECD_00846 0.61 -2.7 890,471 - -2.2 890,554 + ECD_00847 0.12 +2.2 890,571 - ECD_00847 0.15 -0.1 890,633 + ECD_00847 0.25 +0.2 890,715 - ECD_00847 0.39 -0.0 890,715 - ECD_00847 0.39 +0.6 890,715 - ECD_00847 0.39 +1.1 890,835 - ECD_00847 0.59 -1.2 891,021 - ECD_00847 0.90 +0.3 891,102 + +0.9 891,145 - ECD_00848 0.11 -0.0 891,363 - ECD_00848 0.52 +1.2 891,386 - ECD_00848 0.56 +1.2 891,766 + ECD_00849 0.41 +2.5 891,807 + ECD_00849 0.56 +0.6 891,883 - ECD_00849 0.83 +1.5 891,933 + +1.4 892,030 + ECD_00850 0.28 -1.6 892,109 + ECD_00850 0.50 +1.6 892,138 + ECD_00850 0.58 +2.6 892,200 + ECD_00850 0.75 +1.5 892,201 - ECD_00850 0.75 -1.2 892,218 + ECD_00850 0.79 +0.4 892,463 - ECD_00851 0.44 -0.1
Or see this region's nucleotide sequence