Experiment: Bas42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00759 and ECD_00760 are separated by 10 nucleotides ECD_00760 and ECD_00761 overlap by 8 nucleotides
ECD_00759: ECD_00759 - putative ABC transporter permease, at 808,994 to 810,100
_00759
ECD_00760: ECD_00760 - putative ABC transporter permease, at 810,111 to 811,244
_00760
ECD_00761: ECD_00761 - putative ABC transporter ATPase, at 811,237 to 812,973
_00761
Position (kb) 810
811
812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 809.227 kb on + strand, within ECD_00759 at 809.227 kb on + strand, within ECD_00759 at 809.228 kb on - strand, within ECD_00759 at 809.307 kb on - strand, within ECD_00759 at 809.590 kb on - strand, within ECD_00759 at 809.606 kb on - strand, within ECD_00759 at 809.608 kb on - strand, within ECD_00759 at 809.697 kb on + strand, within ECD_00759 at 809.728 kb on + strand, within ECD_00759 at 809.908 kb on + strand, within ECD_00759 at 809.909 kb on - strand, within ECD_00759 at 809.932 kb on + strand, within ECD_00759 at 809.944 kb on - strand, within ECD_00759 at 810.087 kb on - strand at 810.190 kb on - strand at 810.269 kb on - strand, within ECD_00760 at 810.296 kb on + strand, within ECD_00760 at 810.509 kb on + strand, within ECD_00760 at 810.542 kb on - strand, within ECD_00760 at 810.558 kb on - strand, within ECD_00760 at 810.699 kb on - strand, within ECD_00760 at 810.744 kb on + strand, within ECD_00760 at 810.745 kb on - strand, within ECD_00760 at 811.164 kb on - strand at 811.282 kb on - strand at 811.376 kb on + strand at 811.586 kb on - strand, within ECD_00761 at 811.857 kb on + strand, within ECD_00761 at 812.074 kb on - strand, within ECD_00761 at 812.098 kb on - strand, within ECD_00761
Per-strain Table
Position Strand Gene LocusTag Fraction Bas42 remove 809,227 + ECD_00759 0.21 -2.4 809,227 + ECD_00759 0.21 -0.3 809,228 - ECD_00759 0.21 +2.1 809,307 - ECD_00759 0.28 +1.5 809,590 - ECD_00759 0.54 -0.2 809,606 - ECD_00759 0.55 +0.7 809,608 - ECD_00759 0.55 +0.2 809,697 + ECD_00759 0.64 +0.8 809,728 + ECD_00759 0.66 -0.3 809,908 + ECD_00759 0.83 +0.6 809,909 - ECD_00759 0.83 -2.1 809,932 + ECD_00759 0.85 -2.4 809,944 - ECD_00759 0.86 +0.6 810,087 - -1.5 810,190 - -1.6 810,269 - ECD_00760 0.14 -0.7 810,296 + ECD_00760 0.16 +1.2 810,509 + ECD_00760 0.35 +0.2 810,542 - ECD_00760 0.38 +1.5 810,558 - ECD_00760 0.39 -3.3 810,699 - ECD_00760 0.52 -1.9 810,744 + ECD_00760 0.56 +2.1 810,745 - ECD_00760 0.56 -1.0 811,164 - +2.2 811,282 - +0.0 811,376 + +0.5 811,586 - ECD_00761 0.20 +0.4 811,857 + ECD_00761 0.36 -1.2 812,074 - ECD_00761 0.48 +0.2 812,098 - ECD_00761 0.50 +1.6
Or see this region's nucleotide sequence