Strain Fitness in Escherichia coli BL21 around ECD_00495

Experiment: Bas42

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00494 and ECD_00495 are separated by 464 nucleotidesECD_00495 and ECD_00496 are separated by 9 nucleotides ECD_00494: ECD_00494 - DLP12 prophage; putative recombinase, at 537,497 to 539,023 _00494 ECD_00495: ECD_00495 - inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; UPF0098 family secreted protein, at 539,488 to 540,039 _00495 ECD_00496: ECD_00496 - DLP12 prophage; putative DNA-binding transcriptional regulator, at 540,049 to 540,846 _00496 Position (kb) 539 540 541Strain fitness (log2 ratio) -1 0 1 2at 539.637 kb on + strand, within ECD_00495at 539.637 kb on + strand, within ECD_00495at 539.699 kb on + strand, within ECD_00495at 539.773 kb on + strand, within ECD_00495at 539.889 kb on + strand, within ECD_00495at 540.069 kb on + strandat 540.613 kb on + strand, within ECD_00496at 540.632 kb on + strand, within ECD_00496at 540.908 kb on + strandat 540.962 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas42
remove
539,637 + ECD_00495 0.27 -0.1
539,637 + ECD_00495 0.27 +1.8
539,699 + ECD_00495 0.38 -1.4
539,773 + ECD_00495 0.52 -1.2
539,889 + ECD_00495 0.73 +2.3
540,069 + +1.4
540,613 + ECD_00496 0.71 +1.9
540,632 + ECD_00496 0.73 -1.6
540,908 + +0.1
540,962 + +0.7

Or see this region's nucleotide sequence