Experiment: Bas42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00268 and ECD_00269 are separated by 13 nucleotides ECD_00269 and ECD_00270 are separated by 128 nucleotides ECD_00270 and ECD_00271 are separated by 874 nucleotides
ECD_00268: ECD_00268 - betaine aldehyde dehydrogenase, NAD-dependent, at 296,889 to 298,361
_00268
ECD_00269: ECD_00269 - choline-inducible betIBA-betT divergent operon transcriptional repressor, at 298,375 to 298,962
_00269
ECD_00270: ECD_00270 - choline transporter of high affinity, at 299,091 to 301,124
_00270
ECD_00271: ECD_00271 - c-di-GMP-specific phosphodiesterase, at 301,999 to 303,087
_00271
Position (kb) 299
300
301
302 Strain fitness (log2 ratio) -2
-1
0
1
2 at 298.130 kb on + strand, within ECD_00268 at 298.330 kb on - strand at 298.330 kb on - strand at 298.330 kb on - strand at 298.330 kb on - strand at 298.330 kb on - strand at 298.330 kb on - strand at 298.331 kb on + strand at 298.332 kb on - strand at 298.333 kb on + strand at 298.615 kb on - strand, within ECD_00269 at 298.736 kb on - strand, within ECD_00269 at 298.818 kb on - strand, within ECD_00269 at 298.898 kb on - strand, within ECD_00269 at 299.259 kb on + strand at 299.262 kb on + strand at 299.263 kb on - strand at 299.283 kb on + strand at 299.283 kb on + strand at 299.285 kb on + strand at 299.451 kb on + strand, within ECD_00270 at 299.451 kb on + strand, within ECD_00270 at 299.451 kb on + strand, within ECD_00270 at 299.452 kb on - strand, within ECD_00270 at 299.453 kb on + strand, within ECD_00270 at 299.453 kb on + strand, within ECD_00270 at 299.454 kb on - strand, within ECD_00270 at 299.551 kb on - strand, within ECD_00270 at 299.592 kb on + strand, within ECD_00270 at 299.697 kb on - strand, within ECD_00270 at 299.742 kb on - strand, within ECD_00270 at 299.742 kb on - strand, within ECD_00270 at 299.745 kb on + strand, within ECD_00270 at 299.745 kb on + strand, within ECD_00270 at 299.746 kb on - strand, within ECD_00270 at 299.746 kb on - strand, within ECD_00270 at 299.758 kb on + strand, within ECD_00270 at 299.828 kb on + strand, within ECD_00270 at 299.879 kb on + strand, within ECD_00270 at 299.945 kb on + strand, within ECD_00270 at 299.946 kb on - strand, within ECD_00270 at 300.167 kb on + strand, within ECD_00270 at 300.213 kb on + strand, within ECD_00270 at 300.280 kb on - strand, within ECD_00270 at 300.298 kb on - strand, within ECD_00270 at 300.314 kb on + strand, within ECD_00270 at 300.413 kb on + strand, within ECD_00270 at 300.414 kb on - strand, within ECD_00270 at 300.596 kb on - strand, within ECD_00270 at 300.719 kb on + strand, within ECD_00270 at 300.792 kb on + strand, within ECD_00270 at 301.070 kb on + strand at 301.071 kb on - strand at 301.129 kb on + strand at 301.190 kb on - strand at 301.190 kb on - strand at 301.192 kb on - strand at 301.212 kb on - strand at 301.557 kb on + strand at 301.662 kb on + strand at 301.897 kb on + strand at 301.897 kb on + strand at 301.898 kb on - strand at 301.901 kb on + strand at 301.901 kb on + strand at 301.932 kb on + strand at 301.932 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas42 remove 298,130 + ECD_00268 0.84 +0.5 298,330 - +1.6 298,330 - -0.8 298,330 - -1.9 298,330 - +0.1 298,330 - -0.4 298,330 - -1.5 298,331 + +0.5 298,332 - -1.5 298,333 + -0.6 298,615 - ECD_00269 0.41 +0.8 298,736 - ECD_00269 0.61 -2.2 298,818 - ECD_00269 0.75 +0.4 298,898 - ECD_00269 0.89 -0.4 299,259 + +0.4 299,262 + +0.4 299,263 - +0.3 299,283 + -0.0 299,283 + -1.7 299,285 + +1.3 299,451 + ECD_00270 0.18 -0.3 299,451 + ECD_00270 0.18 +0.6 299,451 + ECD_00270 0.18 +0.7 299,452 - ECD_00270 0.18 +0.3 299,453 + ECD_00270 0.18 -2.6 299,453 + ECD_00270 0.18 -0.1 299,454 - ECD_00270 0.18 -2.2 299,551 - ECD_00270 0.23 -1.2 299,592 + ECD_00270 0.25 -1.7 299,697 - ECD_00270 0.30 +0.5 299,742 - ECD_00270 0.32 +0.6 299,742 - ECD_00270 0.32 -1.3 299,745 + ECD_00270 0.32 +1.1 299,745 + ECD_00270 0.32 -0.7 299,746 - ECD_00270 0.32 -1.3 299,746 - ECD_00270 0.32 -1.9 299,758 + ECD_00270 0.33 -0.7 299,828 + ECD_00270 0.36 -2.1 299,879 + ECD_00270 0.39 -1.8 299,945 + ECD_00270 0.42 +0.1 299,946 - ECD_00270 0.42 +2.5 300,167 + ECD_00270 0.53 +0.8 300,213 + ECD_00270 0.55 -1.9 300,280 - ECD_00270 0.58 +1.0 300,298 - ECD_00270 0.59 -1.1 300,314 + ECD_00270 0.60 -0.1 300,413 + ECD_00270 0.65 +0.2 300,414 - ECD_00270 0.65 +1.2 300,596 - ECD_00270 0.74 +0.6 300,719 + ECD_00270 0.80 -2.5 300,792 + ECD_00270 0.84 -1.4 301,070 + -2.1 301,071 - -1.4 301,129 + +1.1 301,190 - -0.3 301,190 - -0.0 301,192 - -0.2 301,212 - -1.1 301,557 + -0.5 301,662 + +0.5 301,897 + -1.7 301,897 + -0.9 301,898 - -0.8 301,901 + +0.8 301,901 + -0.4 301,932 + +1.8 301,932 + +0.8
Or see this region's nucleotide sequence