Strain Fitness in Escherichia coli BL21 around ECD_04219

Experiment: Bas32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04218 and ECD_04219 are separated by 10 nucleotidesECD_04219 and ECD_04220 are separated by 49 nucleotides ECD_04218: ECD_04218 - metal-binding GTPase, at 4,495,025 to 4,495,981 _04218 ECD_04219: ECD_04219 - DUF466 family protein, at 4,495,992 to 4,496,195 _04219 ECD_04220: ECD_04220 - putative transporter, at 4,496,245 to 4,498,395 _04220 Position (kb) 4495 4496 4497Strain fitness (log2 ratio) -2 -1 0 1at 4495.026 kb on + strandat 4495.144 kb on - strand, within ECD_04218at 4495.210 kb on - strand, within ECD_04218at 4495.274 kb on - strand, within ECD_04218at 4495.378 kb on + strand, within ECD_04218at 4495.379 kb on - strand, within ECD_04218at 4495.434 kb on + strand, within ECD_04218at 4495.434 kb on + strand, within ECD_04218at 4495.435 kb on - strand, within ECD_04218at 4495.507 kb on + strand, within ECD_04218at 4495.519 kb on + strand, within ECD_04218at 4495.660 kb on + strand, within ECD_04218at 4495.751 kb on + strand, within ECD_04218at 4495.752 kb on - strand, within ECD_04218at 4495.890 kb on + strandat 4495.907 kb on - strandat 4496.065 kb on + strand, within ECD_04219at 4496.065 kb on + strand, within ECD_04219at 4496.066 kb on - strand, within ECD_04219at 4496.075 kb on - strand, within ECD_04219at 4496.102 kb on + strand, within ECD_04219at 4496.103 kb on - strand, within ECD_04219at 4496.113 kb on + strand, within ECD_04219at 4496.114 kb on - strand, within ECD_04219at 4496.182 kb on - strandat 4496.182 kb on - strandat 4496.182 kb on - strandat 4496.182 kb on - strandat 4496.195 kb on + strandat 4496.195 kb on + strandat 4496.195 kb on + strandat 4496.196 kb on - strandat 4496.196 kb on - strandat 4496.291 kb on + strandat 4496.291 kb on + strandat 4496.291 kb on + strandat 4496.291 kb on + strandat 4496.292 kb on - strandat 4496.370 kb on - strandat 4496.370 kb on - strandat 4496.412 kb on - strandat 4496.490 kb on - strand, within ECD_04220at 4496.504 kb on + strand, within ECD_04220at 4496.504 kb on + strand, within ECD_04220at 4496.505 kb on - strand, within ECD_04220at 4496.505 kb on - strand, within ECD_04220at 4496.505 kb on - strand, within ECD_04220at 4496.571 kb on + strand, within ECD_04220at 4496.572 kb on - strand, within ECD_04220at 4496.610 kb on - strand, within ECD_04220at 4496.610 kb on - strand, within ECD_04220at 4496.628 kb on + strand, within ECD_04220at 4496.659 kb on + strand, within ECD_04220at 4496.741 kb on + strand, within ECD_04220at 4496.742 kb on - strand, within ECD_04220at 4496.853 kb on + strand, within ECD_04220at 4496.853 kb on + strand, within ECD_04220

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas32
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4,495,026 + +0.9
4,495,144 - ECD_04218 0.12 -0.1
4,495,210 - ECD_04218 0.19 -0.2
4,495,274 - ECD_04218 0.26 -1.5
4,495,378 + ECD_04218 0.37 -0.2
4,495,379 - ECD_04218 0.37 -0.1
4,495,434 + ECD_04218 0.43 -2.3
4,495,434 + ECD_04218 0.43 +0.4
4,495,435 - ECD_04218 0.43 -0.8
4,495,507 + ECD_04218 0.50 -0.0
4,495,519 + ECD_04218 0.52 -1.4
4,495,660 + ECD_04218 0.66 +1.7
4,495,751 + ECD_04218 0.76 -0.1
4,495,752 - ECD_04218 0.76 -0.3
4,495,890 + -0.7
4,495,907 - +0.8
4,496,065 + ECD_04219 0.36 -0.4
4,496,065 + ECD_04219 0.36 -0.8
4,496,066 - ECD_04219 0.36 +0.7
4,496,075 - ECD_04219 0.41 -1.3
4,496,102 + ECD_04219 0.54 -1.6
4,496,103 - ECD_04219 0.54 -1.4
4,496,113 + ECD_04219 0.59 -0.5
4,496,114 - ECD_04219 0.60 +0.6
4,496,182 - -2.0
4,496,182 - +0.4
4,496,182 - +0.2
4,496,182 - -0.4
4,496,195 + +0.0
4,496,195 + -0.1
4,496,195 + +0.2
4,496,196 - -0.3
4,496,196 - -0.1
4,496,291 + -1.0
4,496,291 + -0.6
4,496,291 + -1.3
4,496,291 + -0.2
4,496,292 - +0.5
4,496,370 - +0.6
4,496,370 - -1.0
4,496,412 - -0.2
4,496,490 - ECD_04220 0.11 +0.8
4,496,504 + ECD_04220 0.12 +0.2
4,496,504 + ECD_04220 0.12 +0.4
4,496,505 - ECD_04220 0.12 +0.6
4,496,505 - ECD_04220 0.12 +1.1
4,496,505 - ECD_04220 0.12 +0.3
4,496,571 + ECD_04220 0.15 -1.3
4,496,572 - ECD_04220 0.15 +0.2
4,496,610 - ECD_04220 0.17 +0.5
4,496,610 - ECD_04220 0.17 +0.7
4,496,628 + ECD_04220 0.18 -0.5
4,496,659 + ECD_04220 0.19 +0.5
4,496,741 + ECD_04220 0.23 -1.3
4,496,742 - ECD_04220 0.23 +0.7
4,496,853 + ECD_04220 0.28 +0.7
4,496,853 + ECD_04220 0.28 +1.5

Or see this region's nucleotide sequence