Experiment: Bas32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04218 and ECD_04219 are separated by 10 nucleotides ECD_04219 and ECD_04220 are separated by 49 nucleotides
ECD_04218: ECD_04218 - metal-binding GTPase, at 4,495,025 to 4,495,981
_04218
ECD_04219: ECD_04219 - DUF466 family protein, at 4,495,992 to 4,496,195
_04219
ECD_04220: ECD_04220 - putative transporter, at 4,496,245 to 4,498,395
_04220
Position (kb)
4495
4496
4497 Strain fitness (log2 ratio)
-2
-1
0
1 at 4495.026 kb on + strand at 4495.144 kb on - strand, within ECD_04218 at 4495.210 kb on - strand, within ECD_04218 at 4495.274 kb on - strand, within ECD_04218 at 4495.378 kb on + strand, within ECD_04218 at 4495.379 kb on - strand, within ECD_04218 at 4495.434 kb on + strand, within ECD_04218 at 4495.434 kb on + strand, within ECD_04218 at 4495.435 kb on - strand, within ECD_04218 at 4495.507 kb on + strand, within ECD_04218 at 4495.519 kb on + strand, within ECD_04218 at 4495.660 kb on + strand, within ECD_04218 at 4495.751 kb on + strand, within ECD_04218 at 4495.752 kb on - strand, within ECD_04218 at 4495.890 kb on + strand at 4495.907 kb on - strand at 4496.065 kb on + strand, within ECD_04219 at 4496.065 kb on + strand, within ECD_04219 at 4496.066 kb on - strand, within ECD_04219 at 4496.075 kb on - strand, within ECD_04219 at 4496.102 kb on + strand, within ECD_04219 at 4496.103 kb on - strand, within ECD_04219 at 4496.113 kb on + strand, within ECD_04219 at 4496.114 kb on - strand, within ECD_04219 at 4496.182 kb on - strand at 4496.182 kb on - strand at 4496.182 kb on - strand at 4496.182 kb on - strand at 4496.195 kb on + strand at 4496.195 kb on + strand at 4496.195 kb on + strand at 4496.196 kb on - strand at 4496.196 kb on - strand at 4496.291 kb on + strand at 4496.291 kb on + strand at 4496.291 kb on + strand at 4496.291 kb on + strand at 4496.292 kb on - strand at 4496.370 kb on - strand at 4496.370 kb on - strand at 4496.412 kb on - strand at 4496.490 kb on - strand, within ECD_04220 at 4496.504 kb on + strand, within ECD_04220 at 4496.504 kb on + strand, within ECD_04220 at 4496.505 kb on - strand, within ECD_04220 at 4496.505 kb on - strand, within ECD_04220 at 4496.505 kb on - strand, within ECD_04220 at 4496.571 kb on + strand, within ECD_04220 at 4496.572 kb on - strand, within ECD_04220 at 4496.610 kb on - strand, within ECD_04220 at 4496.610 kb on - strand, within ECD_04220 at 4496.628 kb on + strand, within ECD_04220 at 4496.659 kb on + strand, within ECD_04220 at 4496.741 kb on + strand, within ECD_04220 at 4496.742 kb on - strand, within ECD_04220 at 4496.853 kb on + strand, within ECD_04220 at 4496.853 kb on + strand, within ECD_04220
Per-strain Table
Position Strand Gene LocusTag Fraction Bas32 remove 4,495,026 + +0.9 4,495,144 - ECD_04218 0.12 -0.1 4,495,210 - ECD_04218 0.19 -0.2 4,495,274 - ECD_04218 0.26 -1.5 4,495,378 + ECD_04218 0.37 -0.2 4,495,379 - ECD_04218 0.37 -0.1 4,495,434 + ECD_04218 0.43 -2.3 4,495,434 + ECD_04218 0.43 +0.4 4,495,435 - ECD_04218 0.43 -0.8 4,495,507 + ECD_04218 0.50 -0.0 4,495,519 + ECD_04218 0.52 -1.4 4,495,660 + ECD_04218 0.66 +1.7 4,495,751 + ECD_04218 0.76 -0.1 4,495,752 - ECD_04218 0.76 -0.3 4,495,890 + -0.7 4,495,907 - +0.8 4,496,065 + ECD_04219 0.36 -0.4 4,496,065 + ECD_04219 0.36 -0.8 4,496,066 - ECD_04219 0.36 +0.7 4,496,075 - ECD_04219 0.41 -1.3 4,496,102 + ECD_04219 0.54 -1.6 4,496,103 - ECD_04219 0.54 -1.4 4,496,113 + ECD_04219 0.59 -0.5 4,496,114 - ECD_04219 0.60 +0.6 4,496,182 - -2.0 4,496,182 - +0.4 4,496,182 - +0.2 4,496,182 - -0.4 4,496,195 + +0.0 4,496,195 + -0.1 4,496,195 + +0.2 4,496,196 - -0.3 4,496,196 - -0.1 4,496,291 + -1.0 4,496,291 + -0.6 4,496,291 + -1.3 4,496,291 + -0.2 4,496,292 - +0.5 4,496,370 - +0.6 4,496,370 - -1.0 4,496,412 - -0.2 4,496,490 - ECD_04220 0.11 +0.8 4,496,504 + ECD_04220 0.12 +0.2 4,496,504 + ECD_04220 0.12 +0.4 4,496,505 - ECD_04220 0.12 +0.6 4,496,505 - ECD_04220 0.12 +1.1 4,496,505 - ECD_04220 0.12 +0.3 4,496,571 + ECD_04220 0.15 -1.3 4,496,572 - ECD_04220 0.15 +0.2 4,496,610 - ECD_04220 0.17 +0.5 4,496,610 - ECD_04220 0.17 +0.7 4,496,628 + ECD_04220 0.18 -0.5 4,496,659 + ECD_04220 0.19 +0.5 4,496,741 + ECD_04220 0.23 -1.3 4,496,742 - ECD_04220 0.23 +0.7 4,496,853 + ECD_04220 0.28 +0.7 4,496,853 + ECD_04220 0.28 +1.5
Or see this region's nucleotide sequence