Experiment: Bas32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03943 and ECD_03944 overlap by 4 nucleotides ECD_03944 and ECD_03945 overlap by 4 nucleotides ECD_03945 and ECD_03946 are separated by 79 nucleotides
ECD_03943: ECD_03943 - nitrite reductase, formate-dependent, penta-heme cytochrome c, at 4,196,657 to 4,197,223
_03943
ECD_03944: ECD_03944 - formate-dependent nitrite reductase, 4Fe4S subunit, at 4,197,220 to 4,197,891
_03944
ECD_03945: ECD_03945 - formate-dependent nitrite reductase, membrane subunit, at 4,197,888 to 4,198,844
_03945
ECD_03946: ECD_03946 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE, at 4,198,924 to 4,200,582
_03946
Position (kb)
4197
4198
4199 Strain fitness (log2 ratio)
-1
0
1 at 4196.966 kb on + strand, within ECD_03943 at 4196.967 kb on - strand, within ECD_03943 at 4196.967 kb on - strand, within ECD_03943 at 4196.995 kb on + strand, within ECD_03943 at 4196.995 kb on + strand, within ECD_03943 at 4196.995 kb on + strand, within ECD_03943 at 4196.995 kb on + strand, within ECD_03943 at 4196.996 kb on - strand, within ECD_03943 at 4196.996 kb on - strand, within ECD_03943 at 4197.103 kb on + strand, within ECD_03943 at 4197.103 kb on + strand, within ECD_03943 at 4197.103 kb on + strand, within ECD_03943 at 4197.104 kb on - strand, within ECD_03943 at 4197.104 kb on - strand, within ECD_03943 at 4197.117 kb on + strand, within ECD_03943 at 4197.118 kb on - strand, within ECD_03943 at 4197.486 kb on + strand, within ECD_03944 at 4197.579 kb on + strand, within ECD_03944 at 4197.580 kb on - strand, within ECD_03944 at 4197.580 kb on - strand, within ECD_03944 at 4197.688 kb on - strand, within ECD_03944 at 4197.820 kb on + strand, within ECD_03944 at 4198.001 kb on - strand, within ECD_03945 at 4198.037 kb on + strand, within ECD_03945 at 4198.037 kb on + strand, within ECD_03945 at 4198.038 kb on - strand, within ECD_03945 at 4198.149 kb on + strand, within ECD_03945 at 4198.197 kb on + strand, within ECD_03945 at 4198.197 kb on + strand, within ECD_03945 at 4198.198 kb on - strand, within ECD_03945 at 4198.371 kb on + strand, within ECD_03945 at 4198.372 kb on - strand, within ECD_03945 at 4198.372 kb on - strand, within ECD_03945 at 4198.372 kb on - strand, within ECD_03945 at 4198.538 kb on - strand, within ECD_03945 at 4198.561 kb on + strand, within ECD_03945 at 4198.562 kb on - strand, within ECD_03945 at 4198.648 kb on + strand, within ECD_03945 at 4198.648 kb on + strand, within ECD_03945 at 4198.649 kb on - strand, within ECD_03945 at 4198.649 kb on - strand, within ECD_03945 at 4198.649 kb on - strand, within ECD_03945 at 4198.871 kb on + strand at 4198.872 kb on - strand at 4198.872 kb on - strand at 4198.907 kb on + strand at 4198.907 kb on + strand at 4198.908 kb on - strand at 4199.047 kb on + strand at 4199.047 kb on + strand at 4199.080 kb on + strand at 4199.094 kb on + strand, within ECD_03946 at 4199.094 kb on + strand, within ECD_03946 at 4199.094 kb on + strand, within ECD_03946 at 4199.095 kb on - strand, within ECD_03946 at 4199.098 kb on + strand, within ECD_03946 at 4199.099 kb on - strand, within ECD_03946 at 4199.099 kb on - strand, within ECD_03946 at 4199.099 kb on - strand, within ECD_03946 at 4199.099 kb on - strand, within ECD_03946 at 4199.258 kb on + strand, within ECD_03946 at 4199.258 kb on + strand, within ECD_03946 at 4199.259 kb on - strand, within ECD_03946 at 4199.283 kb on - strand, within ECD_03946 at 4199.283 kb on - strand, within ECD_03946 at 4199.283 kb on - strand, within ECD_03946 at 4199.379 kb on + strand, within ECD_03946 at 4199.380 kb on - strand, within ECD_03946 at 4199.401 kb on + strand, within ECD_03946 at 4199.402 kb on - strand, within ECD_03946 at 4199.402 kb on - strand, within ECD_03946 at 4199.453 kb on + strand, within ECD_03946 at 4199.561 kb on - strand, within ECD_03946 at 4199.712 kb on - strand, within ECD_03946 at 4199.712 kb on - strand, within ECD_03946 at 4199.715 kb on + strand, within ECD_03946 at 4199.716 kb on - strand, within ECD_03946 at 4199.716 kb on - strand, within ECD_03946 at 4199.744 kb on + strand, within ECD_03946 at 4199.744 kb on + strand, within ECD_03946 at 4199.744 kb on + strand, within ECD_03946 at 4199.745 kb on - strand, within ECD_03946 at 4199.835 kb on + strand, within ECD_03946
Per-strain Table
Position Strand Gene LocusTag Fraction Bas32 remove 4,196,966 + ECD_03943 0.54 +0.2 4,196,967 - ECD_03943 0.55 +0.6 4,196,967 - ECD_03943 0.55 -0.4 4,196,995 + ECD_03943 0.60 -1.3 4,196,995 + ECD_03943 0.60 -0.5 4,196,995 + ECD_03943 0.60 -0.1 4,196,995 + ECD_03943 0.60 -0.5 4,196,996 - ECD_03943 0.60 -0.1 4,196,996 - ECD_03943 0.60 -1.5 4,197,103 + ECD_03943 0.79 -0.9 4,197,103 + ECD_03943 0.79 -1.2 4,197,103 + ECD_03943 0.79 -0.1 4,197,104 - ECD_03943 0.79 +0.2 4,197,104 - ECD_03943 0.79 +0.2 4,197,117 + ECD_03943 0.81 +1.0 4,197,118 - ECD_03943 0.81 -0.2 4,197,486 + ECD_03944 0.40 -1.3 4,197,579 + ECD_03944 0.53 +0.2 4,197,580 - ECD_03944 0.54 -1.3 4,197,580 - ECD_03944 0.54 +1.3 4,197,688 - ECD_03944 0.70 +0.0 4,197,820 + ECD_03944 0.89 +0.7 4,198,001 - ECD_03945 0.12 -0.2 4,198,037 + ECD_03945 0.16 -0.5 4,198,037 + ECD_03945 0.16 -1.1 4,198,038 - ECD_03945 0.16 +0.3 4,198,149 + ECD_03945 0.27 +0.1 4,198,197 + ECD_03945 0.32 +0.7 4,198,197 + ECD_03945 0.32 -0.6 4,198,198 - ECD_03945 0.32 +0.1 4,198,371 + ECD_03945 0.50 +0.5 4,198,372 - ECD_03945 0.51 -1.0 4,198,372 - ECD_03945 0.51 +0.8 4,198,372 - ECD_03945 0.51 +0.2 4,198,538 - ECD_03945 0.68 -0.5 4,198,561 + ECD_03945 0.70 +0.7 4,198,562 - ECD_03945 0.70 +0.5 4,198,648 + ECD_03945 0.79 +0.4 4,198,648 + ECD_03945 0.79 +0.0 4,198,649 - ECD_03945 0.80 +0.2 4,198,649 - ECD_03945 0.80 -0.0 4,198,649 - ECD_03945 0.80 +0.3 4,198,871 + -0.7 4,198,872 - +1.5 4,198,872 - -0.2 4,198,907 + -1.2 4,198,907 + -0.3 4,198,908 - +0.4 4,199,047 + +0.4 4,199,047 + -1.2 4,199,080 + -0.5 4,199,094 + ECD_03946 0.10 +1.2 4,199,094 + ECD_03946 0.10 +0.8 4,199,094 + ECD_03946 0.10 +0.1 4,199,095 - ECD_03946 0.10 +0.4 4,199,098 + ECD_03946 0.10 +0.0 4,199,099 - ECD_03946 0.11 +0.5 4,199,099 - ECD_03946 0.11 -0.7 4,199,099 - ECD_03946 0.11 +0.2 4,199,099 - ECD_03946 0.11 -0.8 4,199,258 + ECD_03946 0.20 +0.5 4,199,258 + ECD_03946 0.20 +0.3 4,199,259 - ECD_03946 0.20 +1.0 4,199,283 - ECD_03946 0.22 -0.6 4,199,283 - ECD_03946 0.22 -0.3 4,199,283 - ECD_03946 0.22 +0.0 4,199,379 + ECD_03946 0.27 +0.5 4,199,380 - ECD_03946 0.27 -0.9 4,199,401 + ECD_03946 0.29 -0.3 4,199,402 - ECD_03946 0.29 +1.0 4,199,402 - ECD_03946 0.29 +0.7 4,199,453 + ECD_03946 0.32 -0.4 4,199,561 - ECD_03946 0.38 -0.8 4,199,712 - ECD_03946 0.47 +0.8 4,199,712 - ECD_03946 0.47 +0.1 4,199,715 + ECD_03946 0.48 -0.2 4,199,716 - ECD_03946 0.48 -0.7 4,199,716 - ECD_03946 0.48 -0.5 4,199,744 + ECD_03946 0.49 -0.4 4,199,744 + ECD_03946 0.49 +0.2 4,199,744 + ECD_03946 0.49 -0.7 4,199,745 - ECD_03946 0.49 -0.3 4,199,835 + ECD_03946 0.55 +1.0
Or see this region's nucleotide sequence