Strain Fitness in Escherichia coli BL21 around ECD_03945

Experiment: Bas32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03943 and ECD_03944 overlap by 4 nucleotidesECD_03944 and ECD_03945 overlap by 4 nucleotidesECD_03945 and ECD_03946 are separated by 79 nucleotides ECD_03943: ECD_03943 - nitrite reductase, formate-dependent, penta-heme cytochrome c, at 4,196,657 to 4,197,223 _03943 ECD_03944: ECD_03944 - formate-dependent nitrite reductase, 4Fe4S subunit, at 4,197,220 to 4,197,891 _03944 ECD_03945: ECD_03945 - formate-dependent nitrite reductase, membrane subunit, at 4,197,888 to 4,198,844 _03945 ECD_03946: ECD_03946 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE, at 4,198,924 to 4,200,582 _03946 Position (kb) 4197 4198 4199Strain fitness (log2 ratio) -1 0 1at 4196.966 kb on + strand, within ECD_03943at 4196.967 kb on - strand, within ECD_03943at 4196.967 kb on - strand, within ECD_03943at 4196.995 kb on + strand, within ECD_03943at 4196.995 kb on + strand, within ECD_03943at 4196.995 kb on + strand, within ECD_03943at 4196.995 kb on + strand, within ECD_03943at 4196.996 kb on - strand, within ECD_03943at 4196.996 kb on - strand, within ECD_03943at 4197.103 kb on + strand, within ECD_03943at 4197.103 kb on + strand, within ECD_03943at 4197.103 kb on + strand, within ECD_03943at 4197.104 kb on - strand, within ECD_03943at 4197.104 kb on - strand, within ECD_03943at 4197.117 kb on + strand, within ECD_03943at 4197.118 kb on - strand, within ECD_03943at 4197.486 kb on + strand, within ECD_03944at 4197.579 kb on + strand, within ECD_03944at 4197.580 kb on - strand, within ECD_03944at 4197.580 kb on - strand, within ECD_03944at 4197.688 kb on - strand, within ECD_03944at 4197.820 kb on + strand, within ECD_03944at 4198.001 kb on - strand, within ECD_03945at 4198.037 kb on + strand, within ECD_03945at 4198.037 kb on + strand, within ECD_03945at 4198.038 kb on - strand, within ECD_03945at 4198.149 kb on + strand, within ECD_03945at 4198.197 kb on + strand, within ECD_03945at 4198.197 kb on + strand, within ECD_03945at 4198.198 kb on - strand, within ECD_03945at 4198.371 kb on + strand, within ECD_03945at 4198.372 kb on - strand, within ECD_03945at 4198.372 kb on - strand, within ECD_03945at 4198.372 kb on - strand, within ECD_03945at 4198.538 kb on - strand, within ECD_03945at 4198.561 kb on + strand, within ECD_03945at 4198.562 kb on - strand, within ECD_03945at 4198.648 kb on + strand, within ECD_03945at 4198.648 kb on + strand, within ECD_03945at 4198.649 kb on - strand, within ECD_03945at 4198.649 kb on - strand, within ECD_03945at 4198.649 kb on - strand, within ECD_03945at 4198.871 kb on + strandat 4198.872 kb on - strandat 4198.872 kb on - strandat 4198.907 kb on + strandat 4198.907 kb on + strandat 4198.908 kb on - strandat 4199.047 kb on + strandat 4199.047 kb on + strandat 4199.080 kb on + strandat 4199.094 kb on + strand, within ECD_03946at 4199.094 kb on + strand, within ECD_03946at 4199.094 kb on + strand, within ECD_03946at 4199.095 kb on - strand, within ECD_03946at 4199.098 kb on + strand, within ECD_03946at 4199.099 kb on - strand, within ECD_03946at 4199.099 kb on - strand, within ECD_03946at 4199.099 kb on - strand, within ECD_03946at 4199.099 kb on - strand, within ECD_03946at 4199.258 kb on + strand, within ECD_03946at 4199.258 kb on + strand, within ECD_03946at 4199.259 kb on - strand, within ECD_03946at 4199.283 kb on - strand, within ECD_03946at 4199.283 kb on - strand, within ECD_03946at 4199.283 kb on - strand, within ECD_03946at 4199.379 kb on + strand, within ECD_03946at 4199.380 kb on - strand, within ECD_03946at 4199.401 kb on + strand, within ECD_03946at 4199.402 kb on - strand, within ECD_03946at 4199.402 kb on - strand, within ECD_03946at 4199.453 kb on + strand, within ECD_03946at 4199.561 kb on - strand, within ECD_03946at 4199.712 kb on - strand, within ECD_03946at 4199.712 kb on - strand, within ECD_03946at 4199.715 kb on + strand, within ECD_03946at 4199.716 kb on - strand, within ECD_03946at 4199.716 kb on - strand, within ECD_03946at 4199.744 kb on + strand, within ECD_03946at 4199.744 kb on + strand, within ECD_03946at 4199.744 kb on + strand, within ECD_03946at 4199.745 kb on - strand, within ECD_03946at 4199.835 kb on + strand, within ECD_03946

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas32
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4,196,966 + ECD_03943 0.54 +0.2
4,196,967 - ECD_03943 0.55 +0.6
4,196,967 - ECD_03943 0.55 -0.4
4,196,995 + ECD_03943 0.60 -1.3
4,196,995 + ECD_03943 0.60 -0.5
4,196,995 + ECD_03943 0.60 -0.1
4,196,995 + ECD_03943 0.60 -0.5
4,196,996 - ECD_03943 0.60 -0.1
4,196,996 - ECD_03943 0.60 -1.5
4,197,103 + ECD_03943 0.79 -0.9
4,197,103 + ECD_03943 0.79 -1.2
4,197,103 + ECD_03943 0.79 -0.1
4,197,104 - ECD_03943 0.79 +0.2
4,197,104 - ECD_03943 0.79 +0.2
4,197,117 + ECD_03943 0.81 +1.0
4,197,118 - ECD_03943 0.81 -0.2
4,197,486 + ECD_03944 0.40 -1.3
4,197,579 + ECD_03944 0.53 +0.2
4,197,580 - ECD_03944 0.54 -1.3
4,197,580 - ECD_03944 0.54 +1.3
4,197,688 - ECD_03944 0.70 +0.0
4,197,820 + ECD_03944 0.89 +0.7
4,198,001 - ECD_03945 0.12 -0.2
4,198,037 + ECD_03945 0.16 -0.5
4,198,037 + ECD_03945 0.16 -1.1
4,198,038 - ECD_03945 0.16 +0.3
4,198,149 + ECD_03945 0.27 +0.1
4,198,197 + ECD_03945 0.32 +0.7
4,198,197 + ECD_03945 0.32 -0.6
4,198,198 - ECD_03945 0.32 +0.1
4,198,371 + ECD_03945 0.50 +0.5
4,198,372 - ECD_03945 0.51 -1.0
4,198,372 - ECD_03945 0.51 +0.8
4,198,372 - ECD_03945 0.51 +0.2
4,198,538 - ECD_03945 0.68 -0.5
4,198,561 + ECD_03945 0.70 +0.7
4,198,562 - ECD_03945 0.70 +0.5
4,198,648 + ECD_03945 0.79 +0.4
4,198,648 + ECD_03945 0.79 +0.0
4,198,649 - ECD_03945 0.80 +0.2
4,198,649 - ECD_03945 0.80 -0.0
4,198,649 - ECD_03945 0.80 +0.3
4,198,871 + -0.7
4,198,872 - +1.5
4,198,872 - -0.2
4,198,907 + -1.2
4,198,907 + -0.3
4,198,908 - +0.4
4,199,047 + +0.4
4,199,047 + -1.2
4,199,080 + -0.5
4,199,094 + ECD_03946 0.10 +1.2
4,199,094 + ECD_03946 0.10 +0.8
4,199,094 + ECD_03946 0.10 +0.1
4,199,095 - ECD_03946 0.10 +0.4
4,199,098 + ECD_03946 0.10 +0.0
4,199,099 - ECD_03946 0.11 +0.5
4,199,099 - ECD_03946 0.11 -0.7
4,199,099 - ECD_03946 0.11 +0.2
4,199,099 - ECD_03946 0.11 -0.8
4,199,258 + ECD_03946 0.20 +0.5
4,199,258 + ECD_03946 0.20 +0.3
4,199,259 - ECD_03946 0.20 +1.0
4,199,283 - ECD_03946 0.22 -0.6
4,199,283 - ECD_03946 0.22 -0.3
4,199,283 - ECD_03946 0.22 +0.0
4,199,379 + ECD_03946 0.27 +0.5
4,199,380 - ECD_03946 0.27 -0.9
4,199,401 + ECD_03946 0.29 -0.3
4,199,402 - ECD_03946 0.29 +1.0
4,199,402 - ECD_03946 0.29 +0.7
4,199,453 + ECD_03946 0.32 -0.4
4,199,561 - ECD_03946 0.38 -0.8
4,199,712 - ECD_03946 0.47 +0.8
4,199,712 - ECD_03946 0.47 +0.1
4,199,715 + ECD_03946 0.48 -0.2
4,199,716 - ECD_03946 0.48 -0.7
4,199,716 - ECD_03946 0.48 -0.5
4,199,744 + ECD_03946 0.49 -0.4
4,199,744 + ECD_03946 0.49 +0.2
4,199,744 + ECD_03946 0.49 -0.7
4,199,745 - ECD_03946 0.49 -0.3
4,199,835 + ECD_03946 0.55 +1.0

Or see this region's nucleotide sequence