Experiment: Bas32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03637 and ECD_03638 are separated by 125 nucleotides ECD_03638 and ECD_03639 are separated by 3 nucleotides ECD_03639 and ECD_03640 overlap by 35 nucleotides
ECD_03637: ECD_03637 - D-ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor, at 3,826,525 to 3,827,415
_03637
ECD_03638: ECD_03638 - ribokinase, at 3,827,541 to 3,828,470
_03638
ECD_03639: ECD_03639 - transcriptional repressor of ribose metabolism, at 3,828,474 to 3,829,466
_03639
ECD_03640: ECD_03640 - putative multidrug or homocysteine efflux system, at 3,829,432 to 3,830,859
_03640
Position (kb)
3827
3828
3829 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3826.632 kb on + strand, within ECD_03637 at 3826.632 kb on + strand, within ECD_03637 at 3826.632 kb on + strand, within ECD_03637 at 3826.649 kb on + strand, within ECD_03637 at 3826.650 kb on - strand, within ECD_03637 at 3826.693 kb on + strand, within ECD_03637 at 3826.694 kb on - strand, within ECD_03637 at 3826.694 kb on - strand, within ECD_03637 at 3826.695 kb on + strand, within ECD_03637 at 3826.911 kb on + strand, within ECD_03637 at 3826.916 kb on + strand, within ECD_03637 at 3826.916 kb on + strand, within ECD_03637 at 3826.917 kb on - strand, within ECD_03637 at 3826.942 kb on + strand, within ECD_03637 at 3826.942 kb on + strand, within ECD_03637 at 3826.942 kb on + strand, within ECD_03637 at 3826.942 kb on + strand, within ECD_03637 at 3826.942 kb on + strand, within ECD_03637 at 3826.943 kb on - strand, within ECD_03637 at 3826.943 kb on - strand, within ECD_03637 at 3827.001 kb on + strand, within ECD_03637 at 3827.002 kb on - strand, within ECD_03637 at 3827.061 kb on + strand, within ECD_03637 at 3827.062 kb on - strand, within ECD_03637 at 3827.062 kb on - strand, within ECD_03637 at 3827.114 kb on + strand, within ECD_03637 at 3827.114 kb on + strand, within ECD_03637 at 3827.115 kb on - strand, within ECD_03637 at 3827.156 kb on + strand, within ECD_03637 at 3827.247 kb on + strand, within ECD_03637 at 3827.285 kb on + strand, within ECD_03637 at 3827.285 kb on + strand, within ECD_03637 at 3827.286 kb on - strand, within ECD_03637 at 3827.286 kb on - strand, within ECD_03637 at 3827.296 kb on - strand, within ECD_03637 at 3827.347 kb on - strand at 3827.347 kb on - strand at 3827.376 kb on + strand at 3827.377 kb on - strand at 3827.414 kb on - strand at 3827.414 kb on - strand at 3827.431 kb on - strand at 3827.431 kb on - strand at 3827.448 kb on + strand at 3827.448 kb on + strand at 3827.448 kb on + strand at 3827.448 kb on + strand at 3827.448 kb on + strand at 3827.448 kb on + strand at 3827.448 kb on + strand at 3827.449 kb on - strand at 3827.449 kb on - strand at 3827.452 kb on + strand at 3827.452 kb on + strand at 3827.453 kb on - strand at 3827.453 kb on - strand at 3827.453 kb on - strand at 3827.453 kb on - strand at 3827.475 kb on + strand at 3827.475 kb on + strand at 3827.476 kb on - strand at 3827.476 kb on - strand at 3827.476 kb on - strand at 3827.476 kb on - strand at 3827.476 kb on - strand at 3827.478 kb on + strand at 3827.478 kb on + strand at 3827.478 kb on + strand at 3827.479 kb on - strand at 3827.479 kb on - strand at 3827.479 kb on - strand at 3827.480 kb on + strand at 3827.481 kb on - strand at 3827.508 kb on - strand at 3827.526 kb on - strand at 3827.526 kb on - strand at 3827.580 kb on - strand at 3827.647 kb on - strand, within ECD_03638 at 3827.700 kb on - strand, within ECD_03638 at 3827.790 kb on - strand, within ECD_03638 at 3827.873 kb on + strand, within ECD_03638 at 3827.874 kb on - strand, within ECD_03638 at 3827.874 kb on - strand, within ECD_03638 at 3827.933 kb on + strand, within ECD_03638 at 3827.934 kb on - strand, within ECD_03638 at 3827.934 kb on - strand, within ECD_03638 at 3827.956 kb on + strand, within ECD_03638 at 3828.017 kb on + strand, within ECD_03638 at 3828.023 kb on + strand, within ECD_03638 at 3828.035 kb on + strand, within ECD_03638 at 3828.089 kb on + strand, within ECD_03638 at 3828.089 kb on + strand, within ECD_03638 at 3828.090 kb on - strand, within ECD_03638 at 3828.093 kb on - strand, within ECD_03638 at 3828.093 kb on - strand, within ECD_03638 at 3828.172 kb on + strand, within ECD_03638 at 3828.172 kb on + strand, within ECD_03638 at 3828.172 kb on + strand, within ECD_03638 at 3828.206 kb on + strand, within ECD_03638 at 3828.227 kb on - strand, within ECD_03638 at 3828.306 kb on - strand, within ECD_03638 at 3828.323 kb on - strand, within ECD_03638 at 3828.405 kb on - strand at 3828.480 kb on - strand at 3828.594 kb on - strand, within ECD_03639 at 3828.594 kb on - strand, within ECD_03639 at 3828.653 kb on + strand, within ECD_03639 at 3828.653 kb on + strand, within ECD_03639 at 3828.653 kb on + strand, within ECD_03639 at 3828.653 kb on + strand, within ECD_03639 at 3828.654 kb on - strand, within ECD_03639 at 3828.654 kb on - strand, within ECD_03639 at 3828.654 kb on - strand, within ECD_03639 at 3828.654 kb on - strand, within ECD_03639 at 3828.693 kb on + strand, within ECD_03639 at 3828.743 kb on + strand, within ECD_03639 at 3828.743 kb on + strand, within ECD_03639 at 3828.743 kb on + strand, within ECD_03639 at 3828.744 kb on - strand, within ECD_03639 at 3828.744 kb on - strand, within ECD_03639 at 3828.762 kb on - strand, within ECD_03639 at 3828.942 kb on - strand, within ECD_03639 at 3828.973 kb on + strand, within ECD_03639 at 3828.974 kb on - strand, within ECD_03639 at 3828.974 kb on - strand, within ECD_03639 at 3828.974 kb on - strand, within ECD_03639 at 3829.233 kb on + strand, within ECD_03639 at 3829.244 kb on - strand, within ECD_03639 at 3829.245 kb on + strand, within ECD_03639 at 3829.245 kb on + strand, within ECD_03639 at 3829.246 kb on - strand, within ECD_03639 at 3829.246 kb on - strand, within ECD_03639 at 3829.246 kb on - strand, within ECD_03639 at 3829.290 kb on + strand, within ECD_03639 at 3829.317 kb on - strand, within ECD_03639 at 3829.381 kb on + strand at 3829.382 kb on - strand at 3829.426 kb on + strand at 3829.434 kb on - strand at 3829.465 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas32 remove 3,826,632 + ECD_03637 0.12 +0.1 3,826,632 + ECD_03637 0.12 -0.1 3,826,632 + ECD_03637 0.12 +0.6 3,826,649 + ECD_03637 0.14 +0.2 3,826,650 - ECD_03637 0.14 +0.3 3,826,693 + ECD_03637 0.19 +0.3 3,826,694 - ECD_03637 0.19 +0.7 3,826,694 - ECD_03637 0.19 +0.0 3,826,695 + ECD_03637 0.19 +0.2 3,826,911 + ECD_03637 0.43 -0.2 3,826,916 + ECD_03637 0.44 -0.8 3,826,916 + ECD_03637 0.44 +0.0 3,826,917 - ECD_03637 0.44 -1.8 3,826,942 + ECD_03637 0.47 -0.3 3,826,942 + ECD_03637 0.47 -0.3 3,826,942 + ECD_03637 0.47 +0.8 3,826,942 + ECD_03637 0.47 +1.0 3,826,942 + ECD_03637 0.47 +0.8 3,826,943 - ECD_03637 0.47 -0.5 3,826,943 - ECD_03637 0.47 -0.4 3,827,001 + ECD_03637 0.53 -1.6 3,827,002 - ECD_03637 0.54 +1.1 3,827,061 + ECD_03637 0.60 +1.1 3,827,062 - ECD_03637 0.60 +0.0 3,827,062 - ECD_03637 0.60 +0.4 3,827,114 + ECD_03637 0.66 +0.3 3,827,114 + ECD_03637 0.66 +0.4 3,827,115 - ECD_03637 0.66 -0.0 3,827,156 + ECD_03637 0.71 -0.1 3,827,247 + ECD_03637 0.81 -0.1 3,827,285 + ECD_03637 0.85 +1.6 3,827,285 + ECD_03637 0.85 +0.8 3,827,286 - ECD_03637 0.85 +0.2 3,827,286 - ECD_03637 0.85 -0.1 3,827,296 - ECD_03637 0.87 +0.7 3,827,347 - -0.4 3,827,347 - +0.9 3,827,376 + +0.5 3,827,377 - -0.2 3,827,414 - +0.1 3,827,414 - +1.9 3,827,431 - +1.0 3,827,431 - -0.3 3,827,448 + +2.0 3,827,448 + -2.2 3,827,448 + +0.1 3,827,448 + -0.4 3,827,448 + -0.4 3,827,448 + +0.3 3,827,448 + +0.1 3,827,449 - +0.4 3,827,449 - +0.4 3,827,452 + +1.5 3,827,452 + +0.4 3,827,453 - +0.7 3,827,453 - +0.3 3,827,453 - +0.2 3,827,453 - +1.0 3,827,475 + -0.1 3,827,475 + -1.4 3,827,476 - -0.0 3,827,476 - +1.1 3,827,476 - -0.5 3,827,476 - -0.9 3,827,476 - +0.0 3,827,478 + -0.5 3,827,478 + +0.3 3,827,478 + -1.1 3,827,479 - -0.0 3,827,479 - -0.1 3,827,479 - +0.8 3,827,480 + -0.8 3,827,481 - +0.6 3,827,508 - -0.1 3,827,526 - -0.0 3,827,526 - -0.1 3,827,580 - +0.6 3,827,647 - ECD_03638 0.11 +0.6 3,827,700 - ECD_03638 0.17 +1.0 3,827,790 - ECD_03638 0.27 +0.3 3,827,873 + ECD_03638 0.36 -0.7 3,827,874 - ECD_03638 0.36 +1.1 3,827,874 - ECD_03638 0.36 -0.7 3,827,933 + ECD_03638 0.42 +0.0 3,827,934 - ECD_03638 0.42 +0.2 3,827,934 - ECD_03638 0.42 -0.1 3,827,956 + ECD_03638 0.45 +0.0 3,828,017 + ECD_03638 0.51 +0.2 3,828,023 + ECD_03638 0.52 -0.5 3,828,035 + ECD_03638 0.53 -0.6 3,828,089 + ECD_03638 0.59 +0.2 3,828,089 + ECD_03638 0.59 +0.2 3,828,090 - ECD_03638 0.59 +0.1 3,828,093 - ECD_03638 0.59 +0.7 3,828,093 - ECD_03638 0.59 -2.1 3,828,172 + ECD_03638 0.68 -0.1 3,828,172 + ECD_03638 0.68 +0.2 3,828,172 + ECD_03638 0.68 -0.4 3,828,206 + ECD_03638 0.72 +2.5 3,828,227 - ECD_03638 0.74 +1.5 3,828,306 - ECD_03638 0.82 +0.4 3,828,323 - ECD_03638 0.84 +1.1 3,828,405 - -0.2 3,828,480 - +0.0 3,828,594 - ECD_03639 0.12 +0.1 3,828,594 - ECD_03639 0.12 +0.5 3,828,653 + ECD_03639 0.18 +0.4 3,828,653 + ECD_03639 0.18 +0.5 3,828,653 + ECD_03639 0.18 +0.7 3,828,653 + ECD_03639 0.18 -1.0 3,828,654 - ECD_03639 0.18 -0.8 3,828,654 - ECD_03639 0.18 +0.3 3,828,654 - ECD_03639 0.18 +0.6 3,828,654 - ECD_03639 0.18 +0.1 3,828,693 + ECD_03639 0.22 -0.1 3,828,743 + ECD_03639 0.27 +0.0 3,828,743 + ECD_03639 0.27 +0.6 3,828,743 + ECD_03639 0.27 +0.4 3,828,744 - ECD_03639 0.27 +0.9 3,828,744 - ECD_03639 0.27 +1.4 3,828,762 - ECD_03639 0.29 +0.3 3,828,942 - ECD_03639 0.47 +0.9 3,828,973 + ECD_03639 0.50 -0.1 3,828,974 - ECD_03639 0.50 -1.1 3,828,974 - ECD_03639 0.50 -0.2 3,828,974 - ECD_03639 0.50 +0.1 3,829,233 + ECD_03639 0.76 +0.9 3,829,244 - ECD_03639 0.78 +1.0 3,829,245 + ECD_03639 0.78 -0.4 3,829,245 + ECD_03639 0.78 +0.6 3,829,246 - ECD_03639 0.78 -0.7 3,829,246 - ECD_03639 0.78 +0.5 3,829,246 - ECD_03639 0.78 +0.4 3,829,290 + ECD_03639 0.82 +0.7 3,829,317 - ECD_03639 0.85 -0.0 3,829,381 + +1.0 3,829,382 - -1.1 3,829,426 + +0.1 3,829,434 - +0.9 3,829,465 - -0.0
Or see this region's nucleotide sequence