Experiment: Bas32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03138 and ECD_03139 are separated by 45 nucleotides ECD_03139 and ECD_03140 are separated by 21 nucleotides
ECD_03138: ECD_03138 - 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase, at 3,295,384 to 3,296,331
_03138
ECD_03139: ECD_03139 - 16S rRNA m(5)C967 methyltransferase, SAM-dependent, at 3,296,377 to 3,297,666
_03139
ECD_03140: ECD_03140 - NAD-binding component of TrK potassium transporter, at 3,297,688 to 3,299,064
_03140
Position (kb)
3296
3297
3298 Strain fitness (log2 ratio)
-1
0
1 at 3296.345 kb on + strand at 3296.611 kb on + strand, within ECD_03139 at 3296.632 kb on + strand, within ECD_03139 at 3296.703 kb on + strand, within ECD_03139 at 3296.703 kb on + strand, within ECD_03139 at 3296.771 kb on + strand, within ECD_03139 at 3296.774 kb on + strand, within ECD_03139 at 3296.910 kb on + strand, within ECD_03139 at 3297.002 kb on + strand, within ECD_03139 at 3297.002 kb on + strand, within ECD_03139 at 3297.002 kb on + strand, within ECD_03139 at 3297.258 kb on + strand, within ECD_03139 at 3297.338 kb on + strand, within ECD_03139 at 3297.387 kb on + strand, within ECD_03139 at 3297.490 kb on + strand, within ECD_03139 at 3297.522 kb on + strand, within ECD_03139 at 3297.522 kb on + strand, within ECD_03139 at 3297.534 kb on + strand, within ECD_03139
Per-strain Table
Position Strand Gene LocusTag Fraction Bas32 remove 3,296,345 + +0.6 3,296,611 + ECD_03139 0.18 +0.4 3,296,632 + ECD_03139 0.20 +0.4 3,296,703 + ECD_03139 0.25 -0.7 3,296,703 + ECD_03139 0.25 -0.1 3,296,771 + ECD_03139 0.31 -1.1 3,296,774 + ECD_03139 0.31 -0.4 3,296,910 + ECD_03139 0.41 -0.2 3,297,002 + ECD_03139 0.48 +0.8 3,297,002 + ECD_03139 0.48 +1.4 3,297,002 + ECD_03139 0.48 -0.5 3,297,258 + ECD_03139 0.68 -0.1 3,297,338 + ECD_03139 0.74 +0.5 3,297,387 + ECD_03139 0.78 +0.3 3,297,490 + ECD_03139 0.86 +0.5 3,297,522 + ECD_03139 0.89 -0.3 3,297,522 + ECD_03139 0.89 +0.8 3,297,534 + ECD_03139 0.90 -1.0
Or see this region's nucleotide sequence