Experiment: Bas32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04289 and ECD_04342 are separated by 360 nucleotides ECD_04342 and ECD_02414 are separated by 344 nucleotides ECD_02414 and ECD_02415 are separated by 141 nucleotides
ECD_04289: ECD_04289 - transposase, at 2,518,421 to 2,519,260
_04289
ECD_04342: ECD_04342 - hypothetical protein, at 2,519,621 to 2,519,737
_04342
ECD_02414: ECD_02414 - rhodanase-like enzyme, sulfur transfer from thiosulfate, at 2,520,082 to 2,520,858
_02414
ECD_02415: ECD_02415 - aminopeptidase B, at 2,521,000 to 2,522,283
_02415
Position (kb)
2520
2521 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2519.354 kb on - strand at 2519.522 kb on - strand at 2519.672 kb on - strand, within ECD_04342 at 2519.672 kb on - strand, within ECD_04342 at 2519.672 kb on - strand, within ECD_04342 at 2519.680 kb on - strand, within ECD_04342 at 2519.680 kb on - strand, within ECD_04342 at 2519.683 kb on - strand, within ECD_04342 at 2519.819 kb on - strand at 2519.988 kb on + strand at 2519.989 kb on - strand at 2520.711 kb on + strand, within ECD_02414 at 2520.858 kb on + strand at 2520.859 kb on - strand at 2520.859 kb on - strand at 2520.997 kb on - strand at 2521.121 kb on + strand at 2521.537 kb on - strand, within ECD_02415 at 2521.585 kb on - strand, within ECD_02415 at 2521.701 kb on + strand, within ECD_02415 at 2521.718 kb on + strand, within ECD_02415 at 2521.719 kb on - strand, within ECD_02415 at 2521.719 kb on - strand, within ECD_02415 at 2521.812 kb on + strand, within ECD_02415 at 2521.813 kb on - strand, within ECD_02415 at 2521.814 kb on + strand, within ECD_02415 at 2521.814 kb on + strand, within ECD_02415
Per-strain Table
Position Strand Gene LocusTag Fraction Bas32 remove 2,519,354 - +0.1 2,519,522 - -0.2 2,519,672 - ECD_04342 0.44 -0.1 2,519,672 - ECD_04342 0.44 +0.1 2,519,672 - ECD_04342 0.44 -0.5 2,519,680 - ECD_04342 0.50 +0.1 2,519,680 - ECD_04342 0.50 -0.9 2,519,683 - ECD_04342 0.53 -1.0 2,519,819 - -0.2 2,519,988 + -0.4 2,519,989 - +0.6 2,520,711 + ECD_02414 0.81 +0.3 2,520,858 + +0.4 2,520,859 - -0.4 2,520,859 - -2.8 2,520,997 - -0.1 2,521,121 + +0.9 2,521,537 - ECD_02415 0.42 -1.0 2,521,585 - ECD_02415 0.46 -0.3 2,521,701 + ECD_02415 0.55 +0.0 2,521,718 + ECD_02415 0.56 -0.6 2,521,719 - ECD_02415 0.56 +0.3 2,521,719 - ECD_02415 0.56 +0.3 2,521,812 + ECD_02415 0.63 +0.7 2,521,813 - ECD_02415 0.63 +0.6 2,521,814 + ECD_02415 0.63 +0.0 2,521,814 + ECD_02415 0.63 -0.1
Or see this region's nucleotide sequence