Strain Fitness in Escherichia coli BL21 around ECD_01488

Experiment: Bas32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01486 and ECD_01487 are separated by 120 nucleotidesECD_01487 and ECD_01488 overlap by 11 nucleotidesECD_01488 and ECD_01489 are separated by 219 nucleotidesECD_01489 and ECD_01490 are separated by 19 nucleotides ECD_01486: ECD_01486 - UPF0056 family inner membrane protein, at 1,566,816 to 1,567,481 _01486 ECD_01487: ECD_01487 - phage N15 gp48-like protein, at 1,567,602 to 1,567,886 _01487 ECD_01488: ECD_01488 - putative phage protein, at 1,567,876 to 1,568,196 _01488 ECD_01489: ECD_01489 - transcriptional repressor of multiple antibiotic resistance, at 1,568,416 to 1,568,850 _01489 ECD_01490: ECD_01490 - multiple antibiotic resistance transcriptional regulator, at 1,568,870 to 1,569,253 _01490 Position (kb) 1567 1568 1569Strain fitness (log2 ratio) -2 -1 0 1at 1566.939 kb on - strand, within ECD_01486at 1567.065 kb on - strand, within ECD_01486at 1567.334 kb on - strand, within ECD_01486at 1567.429 kb on - strandat 1567.510 kb on + strandat 1567.620 kb on - strandat 1567.620 kb on - strandat 1567.620 kb on - strandat 1567.620 kb on - strandat 1567.646 kb on - strand, within ECD_01487at 1567.654 kb on - strand, within ECD_01487at 1567.654 kb on - strand, within ECD_01487at 1567.654 kb on - strand, within ECD_01487at 1567.662 kb on - strand, within ECD_01487at 1567.678 kb on - strand, within ECD_01487at 1567.678 kb on - strand, within ECD_01487at 1567.957 kb on - strand, within ECD_01488at 1567.967 kb on - strand, within ECD_01488at 1568.197 kb on - strandat 1568.291 kb on - strandat 1568.412 kb on + strandat 1568.412 kb on + strandat 1568.509 kb on + strand, within ECD_01489at 1568.577 kb on + strand, within ECD_01489at 1568.634 kb on + strand, within ECD_01489at 1568.715 kb on + strand, within ECD_01489at 1568.715 kb on + strand, within ECD_01489at 1568.735 kb on + strand, within ECD_01489at 1569.038 kb on + strand, within ECD_01490

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas32
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1,566,939 - ECD_01486 0.18 +1.0
1,567,065 - ECD_01486 0.37 +0.2
1,567,334 - ECD_01486 0.78 -1.5
1,567,429 - -0.3
1,567,510 + +0.1
1,567,620 - -0.9
1,567,620 - -0.8
1,567,620 - -0.8
1,567,620 - +0.5
1,567,646 - ECD_01487 0.15 -0.1
1,567,654 - ECD_01487 0.18 +0.4
1,567,654 - ECD_01487 0.18 +0.9
1,567,654 - ECD_01487 0.18 -1.2
1,567,662 - ECD_01487 0.21 -0.0
1,567,678 - ECD_01487 0.27 -0.4
1,567,678 - ECD_01487 0.27 -0.6
1,567,957 - ECD_01488 0.25 +0.8
1,567,967 - ECD_01488 0.28 +0.2
1,568,197 - -1.8
1,568,291 - -1.5
1,568,412 + -0.5
1,568,412 + -0.5
1,568,509 + ECD_01489 0.21 -0.4
1,568,577 + ECD_01489 0.37 -2.6
1,568,634 + ECD_01489 0.50 -0.4
1,568,715 + ECD_01489 0.69 +0.2
1,568,715 + ECD_01489 0.69 +0.2
1,568,735 + ECD_01489 0.73 -2.2
1,569,038 + ECD_01490 0.44 -1.6

Or see this region's nucleotide sequence