Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2262

Experiment: KB with Paclitaxel 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2261 and Psyr_2262 overlap by 4 nucleotidesPsyr_2262 and Psyr_2263 overlap by 4 nucleotides Psyr_2261: Psyr_2261 - Peptidase M20:Peptidase M20, at 2,625,734 to 2,626,885 _2261 Psyr_2262: Psyr_2262 - Peptidase M20:Peptidase M20, at 2,626,882 to 2,628,309 _2262 Psyr_2263: Psyr_2263 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 2,628,306 to 2,629,328 _2263 Position (kb) 2626 2627 2628 2629Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2625.955 kb on - strand, within Psyr_2261at 2625.955 kb on - strand, within Psyr_2261at 2625.958 kb on + strand, within Psyr_2261at 2625.958 kb on + strand, within Psyr_2261at 2625.959 kb on - strand, within Psyr_2261at 2625.959 kb on - strand, within Psyr_2261at 2625.959 kb on - strand, within Psyr_2261at 2626.076 kb on + strand, within Psyr_2261at 2626.076 kb on + strand, within Psyr_2261at 2626.156 kb on + strand, within Psyr_2261at 2626.226 kb on + strand, within Psyr_2261at 2626.226 kb on + strand, within Psyr_2261at 2626.227 kb on - strand, within Psyr_2261at 2626.682 kb on + strand, within Psyr_2261at 2626.682 kb on + strand, within Psyr_2261at 2626.682 kb on + strand, within Psyr_2261at 2626.682 kb on + strand, within Psyr_2261at 2626.683 kb on - strand, within Psyr_2261at 2626.683 kb on - strand, within Psyr_2261at 2626.683 kb on - strand, within Psyr_2261at 2626.683 kb on - strand, within Psyr_2261at 2626.683 kb on - strand, within Psyr_2261at 2626.785 kb on + strandat 2626.839 kb on + strandat 2626.839 kb on + strandat 2628.304 kb on - strandat 2628.550 kb on + strand, within Psyr_2263at 2628.613 kb on + strand, within Psyr_2263at 2628.613 kb on + strand, within Psyr_2263at 2628.613 kb on + strand, within Psyr_2263at 2628.613 kb on + strand, within Psyr_2263at 2628.613 kb on + strand, within Psyr_2263at 2628.676 kb on + strand, within Psyr_2263at 2628.994 kb on + strand, within Psyr_2263at 2629.075 kb on - strand, within Psyr_2263at 2629.075 kb on - strand, within Psyr_2263at 2629.125 kb on - strand, within Psyr_2263at 2629.257 kb on + strandat 2629.257 kb on + strandat 2629.257 kb on + strandat 2629.258 kb on - strandat 2629.258 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paclitaxel 10 mM
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2,625,955 - Psyr_2261 0.19 +1.1
2,625,955 - Psyr_2261 0.19 -0.1
2,625,958 + Psyr_2261 0.19 +1.2
2,625,958 + Psyr_2261 0.19 +0.3
2,625,959 - Psyr_2261 0.20 +0.3
2,625,959 - Psyr_2261 0.20 -0.2
2,625,959 - Psyr_2261 0.20 -1.3
2,626,076 + Psyr_2261 0.30 +0.1
2,626,076 + Psyr_2261 0.30 +1.2
2,626,156 + Psyr_2261 0.37 -0.1
2,626,226 + Psyr_2261 0.43 -0.1
2,626,226 + Psyr_2261 0.43 -2.3
2,626,227 - Psyr_2261 0.43 +1.6
2,626,682 + Psyr_2261 0.82 +1.3
2,626,682 + Psyr_2261 0.82 -1.5
2,626,682 + Psyr_2261 0.82 +2.7
2,626,682 + Psyr_2261 0.82 -0.1
2,626,683 - Psyr_2261 0.82 -0.6
2,626,683 - Psyr_2261 0.82 +0.8
2,626,683 - Psyr_2261 0.82 -0.5
2,626,683 - Psyr_2261 0.82 +0.5
2,626,683 - Psyr_2261 0.82 -0.1
2,626,785 + -0.4
2,626,839 + -0.1
2,626,839 + -0.7
2,628,304 - -0.1
2,628,550 + Psyr_2263 0.24 -0.0
2,628,613 + Psyr_2263 0.30 +1.6
2,628,613 + Psyr_2263 0.30 +0.3
2,628,613 + Psyr_2263 0.30 -0.3
2,628,613 + Psyr_2263 0.30 +0.9
2,628,613 + Psyr_2263 0.30 +1.2
2,628,676 + Psyr_2263 0.36 +0.4
2,628,994 + Psyr_2263 0.67 -1.3
2,629,075 - Psyr_2263 0.75 -2.9
2,629,075 - Psyr_2263 0.75 +1.1
2,629,125 - Psyr_2263 0.80 +0.2
2,629,257 + +0.2
2,629,257 + -1.5
2,629,257 + +0.5
2,629,258 - -0.3
2,629,258 - -0.3

Or see this region's nucleotide sequence