Experiment: KB with Paclitaxel 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2261 and Psyr_2262 overlap by 4 nucleotides Psyr_2262 and Psyr_2263 overlap by 4 nucleotides
Psyr_2261: Psyr_2261 - Peptidase M20:Peptidase M20, at 2,625,734 to 2,626,885
_2261
Psyr_2262: Psyr_2262 - Peptidase M20:Peptidase M20, at 2,626,882 to 2,628,309
_2262
Psyr_2263: Psyr_2263 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 2,628,306 to 2,629,328
_2263
Position (kb)
2626
2627
2628
2629 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2625.955 kb on - strand, within Psyr_2261 at 2625.955 kb on - strand, within Psyr_2261 at 2625.958 kb on + strand, within Psyr_2261 at 2625.958 kb on + strand, within Psyr_2261 at 2625.959 kb on - strand, within Psyr_2261 at 2625.959 kb on - strand, within Psyr_2261 at 2625.959 kb on - strand, within Psyr_2261 at 2626.076 kb on + strand, within Psyr_2261 at 2626.076 kb on + strand, within Psyr_2261 at 2626.156 kb on + strand, within Psyr_2261 at 2626.226 kb on + strand, within Psyr_2261 at 2626.226 kb on + strand, within Psyr_2261 at 2626.227 kb on - strand, within Psyr_2261 at 2626.682 kb on + strand, within Psyr_2261 at 2626.682 kb on + strand, within Psyr_2261 at 2626.682 kb on + strand, within Psyr_2261 at 2626.682 kb on + strand, within Psyr_2261 at 2626.683 kb on - strand, within Psyr_2261 at 2626.683 kb on - strand, within Psyr_2261 at 2626.683 kb on - strand, within Psyr_2261 at 2626.683 kb on - strand, within Psyr_2261 at 2626.683 kb on - strand, within Psyr_2261 at 2626.785 kb on + strand at 2626.839 kb on + strand at 2626.839 kb on + strand at 2628.304 kb on - strand at 2628.550 kb on + strand, within Psyr_2263 at 2628.613 kb on + strand, within Psyr_2263 at 2628.613 kb on + strand, within Psyr_2263 at 2628.613 kb on + strand, within Psyr_2263 at 2628.613 kb on + strand, within Psyr_2263 at 2628.613 kb on + strand, within Psyr_2263 at 2628.676 kb on + strand, within Psyr_2263 at 2628.994 kb on + strand, within Psyr_2263 at 2629.075 kb on - strand, within Psyr_2263 at 2629.075 kb on - strand, within Psyr_2263 at 2629.125 kb on - strand, within Psyr_2263 at 2629.257 kb on + strand at 2629.257 kb on + strand at 2629.257 kb on + strand at 2629.258 kb on - strand at 2629.258 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Paclitaxel 10 mM remove 2,625,955 - Psyr_2261 0.19 +1.1 2,625,955 - Psyr_2261 0.19 -0.1 2,625,958 + Psyr_2261 0.19 +1.2 2,625,958 + Psyr_2261 0.19 +0.3 2,625,959 - Psyr_2261 0.20 +0.3 2,625,959 - Psyr_2261 0.20 -0.2 2,625,959 - Psyr_2261 0.20 -1.3 2,626,076 + Psyr_2261 0.30 +0.1 2,626,076 + Psyr_2261 0.30 +1.2 2,626,156 + Psyr_2261 0.37 -0.1 2,626,226 + Psyr_2261 0.43 -0.1 2,626,226 + Psyr_2261 0.43 -2.3 2,626,227 - Psyr_2261 0.43 +1.6 2,626,682 + Psyr_2261 0.82 +1.3 2,626,682 + Psyr_2261 0.82 -1.5 2,626,682 + Psyr_2261 0.82 +2.7 2,626,682 + Psyr_2261 0.82 -0.1 2,626,683 - Psyr_2261 0.82 -0.6 2,626,683 - Psyr_2261 0.82 +0.8 2,626,683 - Psyr_2261 0.82 -0.5 2,626,683 - Psyr_2261 0.82 +0.5 2,626,683 - Psyr_2261 0.82 -0.1 2,626,785 + -0.4 2,626,839 + -0.1 2,626,839 + -0.7 2,628,304 - -0.1 2,628,550 + Psyr_2263 0.24 -0.0 2,628,613 + Psyr_2263 0.30 +1.6 2,628,613 + Psyr_2263 0.30 +0.3 2,628,613 + Psyr_2263 0.30 -0.3 2,628,613 + Psyr_2263 0.30 +0.9 2,628,613 + Psyr_2263 0.30 +1.2 2,628,676 + Psyr_2263 0.36 +0.4 2,628,994 + Psyr_2263 0.67 -1.3 2,629,075 - Psyr_2263 0.75 -2.9 2,629,075 - Psyr_2263 0.75 +1.1 2,629,125 - Psyr_2263 0.80 +0.2 2,629,257 + +0.2 2,629,257 + -1.5 2,629,257 + +0.5 2,629,258 - -0.3 2,629,258 - -0.3
Or see this region's nucleotide sequence