Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1592

Experiment: KB with Paclitaxel 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1590 and Psyr_1591 are separated by 55 nucleotidesPsyr_1591 and Psyr_1592 are separated by 32 nucleotidesPsyr_1592 and Psyr_1593 are separated by 247 nucleotides Psyr_1590: Psyr_1590 - L-carnitine dehydratase/bile acid-inducible protein F, at 1,789,271 to 1,790,461 _1590 Psyr_1591: Psyr_1591 - Glyoxalase/bleomycin resistance protein/dioxygenase, at 1,790,517 to 1,790,909 _1591 Psyr_1592: Psyr_1592 - conserved hypothetical protein, at 1,790,942 to 1,791,460 _1592 Psyr_1593: Psyr_1593 - conserved hypothetical protein, at 1,791,708 to 1,793,117 _1593 Position (kb) 1790 1791 1792Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1790.004 kb on - strand, within Psyr_1590at 1790.004 kb on - strand, within Psyr_1590at 1790.004 kb on - strand, within Psyr_1590at 1790.004 kb on - strand, within Psyr_1590at 1790.032 kb on + strand, within Psyr_1590at 1790.032 kb on + strand, within Psyr_1590at 1790.033 kb on - strand, within Psyr_1590at 1790.222 kb on + strand, within Psyr_1590at 1790.223 kb on - strand, within Psyr_1590at 1790.223 kb on - strand, within Psyr_1590at 1790.329 kb on + strand, within Psyr_1590at 1790.330 kb on - strand, within Psyr_1590at 1790.355 kb on + strandat 1790.356 kb on - strandat 1790.356 kb on - strandat 1790.455 kb on + strandat 1790.455 kb on + strandat 1790.456 kb on - strandat 1790.495 kb on + strandat 1790.496 kb on - strandat 1790.543 kb on - strandat 1790.585 kb on - strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.865 kb on - strand, within Psyr_1591at 1790.907 kb on + strandat 1790.908 kb on - strandat 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.162 kb on + strand, within Psyr_1592at 1791.162 kb on + strand, within Psyr_1592at 1791.162 kb on + strand, within Psyr_1592at 1791.162 kb on + strand, within Psyr_1592at 1791.163 kb on - strand, within Psyr_1592at 1791.163 kb on - strand, within Psyr_1592at 1791.163 kb on - strand, within Psyr_1592at 1791.163 kb on - strand, within Psyr_1592at 1791.357 kb on + strand, within Psyr_1592at 1791.358 kb on - strand, within Psyr_1592at 1791.358 kb on - strand, within Psyr_1592at 1791.577 kb on - strandat 1791.590 kb on - strandat 1791.620 kb on - strandat 1791.623 kb on + strandat 1791.624 kb on - strandat 1791.624 kb on - strandat 1791.631 kb on + strandat 1791.631 kb on + strandat 1791.632 kb on - strandat 1791.632 kb on - strandat 1791.639 kb on + strandat 1791.639 kb on + strandat 1791.639 kb on + strandat 1791.639 kb on + strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.640 kb on - strandat 1791.666 kb on + strandat 1791.878 kb on + strand, within Psyr_1593at 1791.878 kb on + strand, within Psyr_1593at 1791.878 kb on + strand, within Psyr_1593at 1791.879 kb on - strand, within Psyr_1593at 1791.879 kb on - strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.882 kb on + strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.883 kb on - strand, within Psyr_1593at 1791.964 kb on - strand, within Psyr_1593at 1791.964 kb on - strand, within Psyr_1593at 1791.994 kb on - strand, within Psyr_1593at 1792.002 kb on + strand, within Psyr_1593at 1792.002 kb on + strand, within Psyr_1593at 1792.002 kb on + strand, within Psyr_1593at 1792.003 kb on - strand, within Psyr_1593at 1792.095 kb on + strand, within Psyr_1593at 1792.096 kb on - strand, within Psyr_1593at 1792.134 kb on + strand, within Psyr_1593at 1792.134 kb on + strand, within Psyr_1593at 1792.134 kb on + strand, within Psyr_1593at 1792.134 kb on + strand, within Psyr_1593at 1792.134 kb on + strand, within Psyr_1593at 1792.134 kb on + strand, within Psyr_1593at 1792.134 kb on + strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.135 kb on - strand, within Psyr_1593at 1792.138 kb on + strand, within Psyr_1593at 1792.168 kb on - strand, within Psyr_1593at 1792.168 kb on - strand, within Psyr_1593at 1792.168 kb on - strand, within Psyr_1593at 1792.339 kb on + strand, within Psyr_1593

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paclitaxel 10 mM
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1,790,004 - Psyr_1590 0.62 +1.8
1,790,004 - Psyr_1590 0.62 -0.2
1,790,004 - Psyr_1590 0.62 +0.6
1,790,004 - Psyr_1590 0.62 -0.6
1,790,032 + Psyr_1590 0.64 +0.3
1,790,032 + Psyr_1590 0.64 -0.3
1,790,033 - Psyr_1590 0.64 +0.2
1,790,222 + Psyr_1590 0.80 -0.2
1,790,223 - Psyr_1590 0.80 -1.0
1,790,223 - Psyr_1590 0.80 -0.9
1,790,329 + Psyr_1590 0.89 -0.6
1,790,330 - Psyr_1590 0.89 -0.7
1,790,355 + +0.3
1,790,356 - +0.1
1,790,356 - +0.2
1,790,455 + -0.7
1,790,455 + +3.5
1,790,456 - +1.0
1,790,495 + +1.1
1,790,496 - +1.0
1,790,543 - +2.7
1,790,585 - Psyr_1591 0.17 +0.6
1,790,844 + Psyr_1591 0.83 -0.1
1,790,844 + Psyr_1591 0.83 -0.3
1,790,844 + Psyr_1591 0.83 -0.9
1,790,844 + Psyr_1591 0.83 +0.9
1,790,844 + Psyr_1591 0.83 +1.3
1,790,844 + Psyr_1591 0.83 -0.1
1,790,844 + Psyr_1591 0.83 +1.1
1,790,844 + Psyr_1591 0.83 +1.1
1,790,845 - Psyr_1591 0.83 +0.1
1,790,845 - Psyr_1591 0.83 -1.4
1,790,845 - Psyr_1591 0.83 +0.3
1,790,845 - Psyr_1591 0.83 -0.4
1,790,845 - Psyr_1591 0.83 +0.1
1,790,845 - Psyr_1591 0.83 -1.6
1,790,845 - Psyr_1591 0.83 -0.2
1,790,865 - Psyr_1591 0.89 +0.0
1,790,907 + +1.0
1,790,908 - -0.5
1,791,012 + Psyr_1592 0.13 +0.1
1,791,012 + Psyr_1592 0.13 -0.8
1,791,012 + Psyr_1592 0.13 -2.4
1,791,012 + Psyr_1592 0.13 +0.4
1,791,012 + Psyr_1592 0.13 -0.3
1,791,012 + Psyr_1592 0.13 -0.0
1,791,012 + Psyr_1592 0.13 -2.4
1,791,012 + Psyr_1592 0.13 -0.3
1,791,012 + Psyr_1592 0.13 +0.4
1,791,012 + Psyr_1592 0.13 -0.3
1,791,012 + Psyr_1592 0.13 -1.9
1,791,012 + Psyr_1592 0.13 -0.9
1,791,012 + Psyr_1592 0.13 -0.8
1,791,012 + Psyr_1592 0.13 +1.5
1,791,012 + Psyr_1592 0.13 -0.7
1,791,012 + Psyr_1592 0.13 +1.5
1,791,013 - Psyr_1592 0.14 -0.7
1,791,013 - Psyr_1592 0.14 +0.5
1,791,013 - Psyr_1592 0.14 -0.2
1,791,013 - Psyr_1592 0.14 -0.3
1,791,013 - Psyr_1592 0.14 +0.3
1,791,013 - Psyr_1592 0.14 +0.8
1,791,013 - Psyr_1592 0.14 +0.8
1,791,013 - Psyr_1592 0.14 +0.6
1,791,013 - Psyr_1592 0.14 -0.7
1,791,013 - Psyr_1592 0.14 +0.5
1,791,013 - Psyr_1592 0.14 +0.6
1,791,013 - Psyr_1592 0.14 -2.3
1,791,013 - Psyr_1592 0.14 +5.1
1,791,013 - Psyr_1592 0.14 -0.2
1,791,086 + Psyr_1592 0.28 +0.1
1,791,086 + Psyr_1592 0.28 +0.6
1,791,086 + Psyr_1592 0.28 +1.1
1,791,087 - Psyr_1592 0.28 -1.5
1,791,087 - Psyr_1592 0.28 -0.4
1,791,087 - Psyr_1592 0.28 -0.2
1,791,162 + Psyr_1592 0.42 +0.1
1,791,162 + Psyr_1592 0.42 +0.8
1,791,162 + Psyr_1592 0.42 -0.0
1,791,162 + Psyr_1592 0.42 +0.3
1,791,163 - Psyr_1592 0.43 +1.8
1,791,163 - Psyr_1592 0.43 -0.2
1,791,163 - Psyr_1592 0.43 -1.4
1,791,163 - Psyr_1592 0.43 +0.8
1,791,357 + Psyr_1592 0.80 +3.7
1,791,358 - Psyr_1592 0.80 -1.2
1,791,358 - Psyr_1592 0.80 -0.5
1,791,577 - +0.2
1,791,590 - -0.3
1,791,620 - -1.4
1,791,623 + +0.6
1,791,624 - -0.3
1,791,624 - -0.4
1,791,631 + -1.2
1,791,631 + -1.8
1,791,632 - -0.9
1,791,632 - +3.0
1,791,639 + -1.1
1,791,639 + +1.6
1,791,639 + +0.6
1,791,639 + +1.5
1,791,640 - -1.1
1,791,640 - -0.7
1,791,640 - -0.1
1,791,640 - +0.5
1,791,640 - +0.1
1,791,640 - -0.3
1,791,640 - +0.5
1,791,640 - +0.4
1,791,640 - +0.1
1,791,666 + +1.0
1,791,878 + Psyr_1593 0.12 +0.1
1,791,878 + Psyr_1593 0.12 +0.6
1,791,878 + Psyr_1593 0.12 -1.3
1,791,879 - Psyr_1593 0.12 +3.1
1,791,879 - Psyr_1593 0.12 -0.5
1,791,882 + Psyr_1593 0.12 +0.2
1,791,882 + Psyr_1593 0.12 -1.6
1,791,882 + Psyr_1593 0.12 +0.6
1,791,882 + Psyr_1593 0.12 -1.2
1,791,882 + Psyr_1593 0.12 -0.2
1,791,882 + Psyr_1593 0.12 -0.6
1,791,882 + Psyr_1593 0.12 -0.0
1,791,882 + Psyr_1593 0.12 +0.3
1,791,882 + Psyr_1593 0.12 -0.9
1,791,882 + Psyr_1593 0.12 +0.1
1,791,882 + Psyr_1593 0.12 +0.9
1,791,882 + Psyr_1593 0.12 -2.0
1,791,883 - Psyr_1593 0.12 +0.7
1,791,883 - Psyr_1593 0.12 +2.7
1,791,883 - Psyr_1593 0.12 +0.8
1,791,883 - Psyr_1593 0.12 +2.3
1,791,964 - Psyr_1593 0.18 -2.7
1,791,964 - Psyr_1593 0.18 -0.1
1,791,994 - Psyr_1593 0.20 +0.1
1,792,002 + Psyr_1593 0.21 -1.4
1,792,002 + Psyr_1593 0.21 -1.3
1,792,002 + Psyr_1593 0.21 +4.0
1,792,003 - Psyr_1593 0.21 +3.0
1,792,095 + Psyr_1593 0.27 +3.5
1,792,096 - Psyr_1593 0.28 +0.2
1,792,134 + Psyr_1593 0.30 -1.2
1,792,134 + Psyr_1593 0.30 -0.0
1,792,134 + Psyr_1593 0.30 +0.0
1,792,134 + Psyr_1593 0.30 -0.4
1,792,134 + Psyr_1593 0.30 -1.1
1,792,134 + Psyr_1593 0.30 +1.3
1,792,134 + Psyr_1593 0.30 -0.1
1,792,135 - Psyr_1593 0.30 -0.3
1,792,135 - Psyr_1593 0.30 -0.1
1,792,135 - Psyr_1593 0.30 +0.3
1,792,135 - Psyr_1593 0.30 -0.8
1,792,138 + Psyr_1593 0.30 -0.7
1,792,168 - Psyr_1593 0.33 -0.0
1,792,168 - Psyr_1593 0.33 -0.2
1,792,168 - Psyr_1593 0.33 +2.1
1,792,339 + Psyr_1593 0.45 -0.6

Or see this region's nucleotide sequence