Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0570

Experiment: KB with Paclitaxel 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0569 and Psyr_0570 overlap by 1 nucleotidesPsyr_0570 and Psyr_0571 are separated by 0 nucleotides Psyr_0569: Psyr_0569 - N-acetylmuramoyl-L-alanine amidase, at 646,192 to 647,607 _0569 Psyr_0570: Psyr_0570 - DNA mismatch repair protein MutL, at 647,607 to 649,553 _0570 Psyr_0571: Psyr_0571 - tRNA isopentenyltransferase, at 649,554 to 650,525 _0571 Position (kb) 647 648 649 650Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.501 kb on - strandat 647.577 kb on + strandat 647.577 kb on + strandat 647.895 kb on - strand, within Psyr_0570at 648.106 kb on + strand, within Psyr_0570at 648.106 kb on + strand, within Psyr_0570at 648.107 kb on - strand, within Psyr_0570at 648.107 kb on - strand, within Psyr_0570at 648.125 kb on + strand, within Psyr_0570at 648.126 kb on - strand, within Psyr_0570at 648.426 kb on + strand, within Psyr_0570at 648.427 kb on - strand, within Psyr_0570at 648.489 kb on + strand, within Psyr_0570at 648.566 kb on - strand, within Psyr_0570at 648.566 kb on - strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.643 kb on - strand, within Psyr_0570at 648.852 kb on + strand, within Psyr_0570at 648.852 kb on + strand, within Psyr_0570at 648.852 kb on + strand, within Psyr_0570at 648.853 kb on - strand, within Psyr_0570at 648.853 kb on - strand, within Psyr_0570at 648.968 kb on + strand, within Psyr_0570at 648.984 kb on + strand, within Psyr_0570at 648.984 kb on + strand, within Psyr_0570at 648.985 kb on - strand, within Psyr_0570at 649.007 kb on + strand, within Psyr_0570at 649.007 kb on + strand, within Psyr_0570at 649.007 kb on + strand, within Psyr_0570at 649.008 kb on - strand, within Psyr_0570at 649.008 kb on - strand, within Psyr_0570at 649.008 kb on - strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.012 kb on - strand, within Psyr_0570at 649.012 kb on - strand, within Psyr_0570at 649.012 kb on - strand, within Psyr_0570at 649.012 kb on - strand, within Psyr_0570at 649.080 kb on + strand, within Psyr_0570at 649.080 kb on + strand, within Psyr_0570at 649.080 kb on + strand, within Psyr_0570at 649.096 kb on + strand, within Psyr_0570at 649.096 kb on + strand, within Psyr_0570at 649.496 kb on + strandat 649.564 kb on + strandat 649.838 kb on + strand, within Psyr_0571at 649.838 kb on + strand, within Psyr_0571at 649.839 kb on - strand, within Psyr_0571at 649.839 kb on - strand, within Psyr_0571at 649.862 kb on + strand, within Psyr_0571at 649.862 kb on + strand, within Psyr_0571at 649.862 kb on + strand, within Psyr_0571at 649.862 kb on + strand, within Psyr_0571at 649.869 kb on + strand, within Psyr_0571at 649.870 kb on - strand, within Psyr_0571at 649.870 kb on - strand, within Psyr_0571at 650.015 kb on + strand, within Psyr_0571at 650.015 kb on + strand, within Psyr_0571at 650.016 kb on - strand, within Psyr_0571at 650.016 kb on - strand, within Psyr_0571at 650.016 kb on - strand, within Psyr_0571at 650.154 kb on + strand, within Psyr_0571at 650.155 kb on - strand, within Psyr_0571at 650.157 kb on - strand, within Psyr_0571at 650.157 kb on - strand, within Psyr_0571at 650.157 kb on - strand, within Psyr_0571at 650.515 kb on + strandat 650.515 kb on + strandat 650.544 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paclitaxel 10 mM
remove
647,404 + Psyr_0569 0.86 +0.1
647,404 + Psyr_0569 0.86 +1.0
647,404 + Psyr_0569 0.86 +1.2
647,404 + Psyr_0569 0.86 +0.2
647,404 + Psyr_0569 0.86 -0.1
647,404 + Psyr_0569 0.86 -0.1
647,404 + Psyr_0569 0.86 +0.3
647,404 + Psyr_0569 0.86 +1.5
647,404 + Psyr_0569 0.86 +0.2
647,404 + Psyr_0569 0.86 -0.4
647,404 + Psyr_0569 0.86 -1.1
647,405 - Psyr_0569 0.86 +1.2
647,405 - Psyr_0569 0.86 -0.6
647,405 - Psyr_0569 0.86 +1.2
647,405 - Psyr_0569 0.86 +0.8
647,405 - Psyr_0569 0.86 +1.2
647,405 - Psyr_0569 0.86 -0.1
647,405 - Psyr_0569 0.86 -1.7
647,405 - Psyr_0569 0.86 -2.5
647,405 - Psyr_0569 0.86 +1.0
647,501 - -1.4
647,577 + -1.8
647,577 + -0.5
647,895 - Psyr_0570 0.15 -0.5
648,106 + Psyr_0570 0.26 -0.4
648,106 + Psyr_0570 0.26 -2.8
648,107 - Psyr_0570 0.26 +0.2
648,107 - Psyr_0570 0.26 -0.9
648,125 + Psyr_0570 0.27 -0.1
648,126 - Psyr_0570 0.27 +0.2
648,426 + Psyr_0570 0.42 +0.4
648,427 - Psyr_0570 0.42 +0.6
648,489 + Psyr_0570 0.45 -1.7
648,566 - Psyr_0570 0.49 -0.6
648,566 - Psyr_0570 0.49 -1.5
648,628 + Psyr_0570 0.52 +0.1
648,628 + Psyr_0570 0.52 -1.5
648,628 + Psyr_0570 0.52 +1.0
648,628 + Psyr_0570 0.52 -0.5
648,628 + Psyr_0570 0.52 +2.2
648,628 + Psyr_0570 0.52 -1.0
648,628 + Psyr_0570 0.52 +1.2
648,628 + Psyr_0570 0.52 -0.5
648,628 + Psyr_0570 0.52 +0.1
648,629 - Psyr_0570 0.52 -1.0
648,629 - Psyr_0570 0.52 +0.7
648,629 - Psyr_0570 0.52 -0.5
648,629 - Psyr_0570 0.52 -2.2
648,629 - Psyr_0570 0.52 -1.6
648,629 - Psyr_0570 0.52 -1.5
648,629 - Psyr_0570 0.52 +0.2
648,629 - Psyr_0570 0.52 -1.7
648,629 - Psyr_0570 0.52 +0.8
648,629 - Psyr_0570 0.52 +2.2
648,629 - Psyr_0570 0.52 -0.4
648,629 - Psyr_0570 0.52 +0.2
648,643 - Psyr_0570 0.53 -2.3
648,852 + Psyr_0570 0.64 +0.3
648,852 + Psyr_0570 0.64 +1.8
648,852 + Psyr_0570 0.64 -0.4
648,853 - Psyr_0570 0.64 -0.1
648,853 - Psyr_0570 0.64 -3.4
648,968 + Psyr_0570 0.70 +0.3
648,984 + Psyr_0570 0.71 -1.7
648,984 + Psyr_0570 0.71 +1.2
648,985 - Psyr_0570 0.71 -1.2
649,007 + Psyr_0570 0.72 +0.6
649,007 + Psyr_0570 0.72 -0.9
649,007 + Psyr_0570 0.72 -1.3
649,008 - Psyr_0570 0.72 +0.6
649,008 - Psyr_0570 0.72 +0.8
649,008 - Psyr_0570 0.72 -2.8
649,011 + Psyr_0570 0.72 +0.5
649,011 + Psyr_0570 0.72 +0.8
649,011 + Psyr_0570 0.72 +0.5
649,011 + Psyr_0570 0.72 -0.2
649,011 + Psyr_0570 0.72 -1.1
649,011 + Psyr_0570 0.72 -0.6
649,011 + Psyr_0570 0.72 -2.0
649,011 + Psyr_0570 0.72 +0.6
649,012 - Psyr_0570 0.72 -0.7
649,012 - Psyr_0570 0.72 +0.0
649,012 - Psyr_0570 0.72 -1.9
649,012 - Psyr_0570 0.72 -1.4
649,080 + Psyr_0570 0.76 -0.5
649,080 + Psyr_0570 0.76 +3.8
649,080 + Psyr_0570 0.76 +0.7
649,096 + Psyr_0570 0.76 -0.3
649,096 + Psyr_0570 0.76 +0.4
649,496 + -0.8
649,564 + +0.6
649,838 + Psyr_0571 0.29 -1.0
649,838 + Psyr_0571 0.29 -2.6
649,839 - Psyr_0571 0.29 +2.2
649,839 - Psyr_0571 0.29 +0.2
649,862 + Psyr_0571 0.32 -0.2
649,862 + Psyr_0571 0.32 -1.1
649,862 + Psyr_0571 0.32 -1.6
649,862 + Psyr_0571 0.32 +1.6
649,869 + Psyr_0571 0.32 -0.7
649,870 - Psyr_0571 0.33 -1.0
649,870 - Psyr_0571 0.33 +2.5
650,015 + Psyr_0571 0.47 -0.1
650,015 + Psyr_0571 0.47 -2.1
650,016 - Psyr_0571 0.48 -0.5
650,016 - Psyr_0571 0.48 -0.2
650,016 - Psyr_0571 0.48 -1.4
650,154 + Psyr_0571 0.62 -3.0
650,155 - Psyr_0571 0.62 +0.6
650,157 - Psyr_0571 0.62 +1.2
650,157 - Psyr_0571 0.62 -1.9
650,157 - Psyr_0571 0.62 -1.0
650,515 + -0.2
650,515 + +0.3
650,544 + +2.4

Or see this region's nucleotide sequence