Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1701

Experiment: KB with Conessine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1700 and Psyr_1701 are separated by 27 nucleotidesPsyr_1701 and Psyr_1702 are separated by 433 nucleotides Psyr_1700: Psyr_1700 - Glycosyl hydrolase, BNR repeat protein, at 1,907,992 to 1,909,101 _1700 Psyr_1701: Psyr_1701 - membrane protein, putative, at 1,909,129 to 1,911,519 _1701 Psyr_1702: Psyr_1702 - regulatory protein, LuxR, at 1,911,953 to 1,912,669 _1702 Position (kb) 1909 1910 1911 1912Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1908.285 kb on + strand, within Psyr_1700at 1908.285 kb on + strand, within Psyr_1700at 1908.285 kb on + strand, within Psyr_1700at 1908.285 kb on + strand, within Psyr_1700at 1908.285 kb on + strand, within Psyr_1700at 1908.781 kb on + strand, within Psyr_1700at 1908.782 kb on - strand, within Psyr_1700at 1909.043 kb on + strandat 1909.099 kb on + strandat 1909.100 kb on - strandat 1909.100 kb on - strandat 1909.100 kb on - strandat 1909.360 kb on - strandat 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.414 kb on + strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.415 kb on - strand, within Psyr_1701at 1909.453 kb on + strand, within Psyr_1701at 1909.453 kb on + strand, within Psyr_1701at 1909.454 kb on - strand, within Psyr_1701at 1909.716 kb on - strand, within Psyr_1701at 1909.729 kb on + strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.774 kb on + strand, within Psyr_1701at 1909.899 kb on + strand, within Psyr_1701at 1910.819 kb on - strand, within Psyr_1701at 1910.869 kb on - strand, within Psyr_1701at 1910.869 kb on - strand, within Psyr_1701at 1910.929 kb on - strand, within Psyr_1701at 1911.031 kb on + strand, within Psyr_1701at 1911.031 kb on + strand, within Psyr_1701at 1911.031 kb on + strand, within Psyr_1701at 1911.032 kb on - strand, within Psyr_1701at 1911.147 kb on - strand, within Psyr_1701at 1911.220 kb on + strand, within Psyr_1701at 1911.220 kb on + strand, within Psyr_1701at 1911.220 kb on + strand, within Psyr_1701at 1911.220 kb on + strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.226 kb on + strand, within Psyr_1701at 1911.227 kb on - strand, within Psyr_1701at 1911.227 kb on - strand, within Psyr_1701at 1911.277 kb on + strand, within Psyr_1701at 1911.277 kb on + strand, within Psyr_1701at 1911.281 kb on - strandat 1911.738 kb on + strandat 1911.778 kb on - strandat 1911.797 kb on + strandat 1911.937 kb on + strandat 1911.937 kb on + strandat 1911.979 kb on + strandat 1911.979 kb on + strandat 1911.980 kb on - strandat 1912.066 kb on + strand, within Psyr_1702at 1912.066 kb on + strand, within Psyr_1702at 1912.067 kb on - strand, within Psyr_1702at 1912.067 kb on - strand, within Psyr_1702at 1912.067 kb on - strand, within Psyr_1702at 1912.070 kb on + strand, within Psyr_1702at 1912.148 kb on - strand, within Psyr_1702at 1912.216 kb on - strand, within Psyr_1702at 1912.216 kb on - strand, within Psyr_1702at 1912.216 kb on - strand, within Psyr_1702at 1912.219 kb on + strand, within Psyr_1702at 1912.372 kb on + strand, within Psyr_1702at 1912.433 kb on - strand, within Psyr_1702at 1912.508 kb on + strand, within Psyr_1702at 1912.509 kb on - strand, within Psyr_1702at 1912.509 kb on - strand, within Psyr_1702at 1912.509 kb on - strand, within Psyr_1702at 1912.509 kb on - strand, within Psyr_1702at 1912.509 kb on - strand, within Psyr_1702at 1912.512 kb on + strand, within Psyr_1702at 1912.512 kb on + strand, within Psyr_1702at 1912.513 kb on - strand, within Psyr_1702

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Conessine 10 mM
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1,908,285 + Psyr_1700 0.26 +0.1
1,908,285 + Psyr_1700 0.26 +3.1
1,908,285 + Psyr_1700 0.26 -0.9
1,908,285 + Psyr_1700 0.26 +3.9
1,908,285 + Psyr_1700 0.26 +1.5
1,908,781 + Psyr_1700 0.71 +2.9
1,908,782 - Psyr_1700 0.71 -0.5
1,909,043 + -1.1
1,909,099 + +0.6
1,909,100 - +1.1
1,909,100 - -0.6
1,909,100 - +0.5
1,909,360 - -0.4
1,909,414 + Psyr_1701 0.12 -0.5
1,909,414 + Psyr_1701 0.12 -0.2
1,909,414 + Psyr_1701 0.12 -0.5
1,909,414 + Psyr_1701 0.12 -0.9
1,909,415 - Psyr_1701 0.12 -0.9
1,909,415 - Psyr_1701 0.12 -0.6
1,909,453 + Psyr_1701 0.14 +0.5
1,909,453 + Psyr_1701 0.14 -0.5
1,909,454 - Psyr_1701 0.14 +0.7
1,909,716 - Psyr_1701 0.25 -0.5
1,909,729 + Psyr_1701 0.25 -1.1
1,909,774 + Psyr_1701 0.27 -0.8
1,909,774 + Psyr_1701 0.27 -0.4
1,909,774 + Psyr_1701 0.27 +0.2
1,909,899 + Psyr_1701 0.32 +1.0
1,910,819 - Psyr_1701 0.71 +0.7
1,910,869 - Psyr_1701 0.73 -0.1
1,910,869 - Psyr_1701 0.73 +0.1
1,910,929 - Psyr_1701 0.75 +2.4
1,911,031 + Psyr_1701 0.80 +0.3
1,911,031 + Psyr_1701 0.80 +0.4
1,911,031 + Psyr_1701 0.80 +1.1
1,911,032 - Psyr_1701 0.80 -1.3
1,911,147 - Psyr_1701 0.84 +0.0
1,911,220 + Psyr_1701 0.87 +3.4
1,911,220 + Psyr_1701 0.87 -2.3
1,911,220 + Psyr_1701 0.87 -1.6
1,911,220 + Psyr_1701 0.87 -3.1
1,911,221 - Psyr_1701 0.87 +0.7
1,911,221 - Psyr_1701 0.87 +0.7
1,911,226 + Psyr_1701 0.88 +0.3
1,911,227 - Psyr_1701 0.88 +2.1
1,911,227 - Psyr_1701 0.88 +2.7
1,911,277 + Psyr_1701 0.90 +1.6
1,911,277 + Psyr_1701 0.90 +0.1
1,911,281 - +0.3
1,911,738 + -1.1
1,911,778 - -1.3
1,911,797 + -3.5
1,911,937 + -2.0
1,911,937 + -1.0
1,911,979 + -0.4
1,911,979 + +1.2
1,911,980 - +0.1
1,912,066 + Psyr_1702 0.16 +1.1
1,912,066 + Psyr_1702 0.16 -0.9
1,912,067 - Psyr_1702 0.16 +0.4
1,912,067 - Psyr_1702 0.16 -2.2
1,912,067 - Psyr_1702 0.16 -1.5
1,912,070 + Psyr_1702 0.16 +0.4
1,912,148 - Psyr_1702 0.27 +1.5
1,912,216 - Psyr_1702 0.37 -1.7
1,912,216 - Psyr_1702 0.37 -1.6
1,912,216 - Psyr_1702 0.37 -0.9
1,912,219 + Psyr_1702 0.37 +0.6
1,912,372 + Psyr_1702 0.58 -1.5
1,912,433 - Psyr_1702 0.67 -0.6
1,912,508 + Psyr_1702 0.77 +1.7
1,912,509 - Psyr_1702 0.78 -0.6
1,912,509 - Psyr_1702 0.78 -1.0
1,912,509 - Psyr_1702 0.78 +0.4
1,912,509 - Psyr_1702 0.78 -0.3
1,912,509 - Psyr_1702 0.78 +0.6
1,912,512 + Psyr_1702 0.78 -1.1
1,912,512 + Psyr_1702 0.78 -0.2
1,912,513 - Psyr_1702 0.78 +0.0

Or see this region's nucleotide sequence