Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1389

Experiment: KB with Conessine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1387 and Psyr_1388 are separated by 96 nucleotidesPsyr_1388 and Psyr_1389 are separated by 10 nucleotidesPsyr_1389 and Psyr_1390 are separated by 79 nucleotidesPsyr_1390 and Psyr_1391 are separated by 92 nucleotides Psyr_1387: Psyr_1387 - Ferredoxin--NADP(+) reductase, at 1,569,129 to 1,569,908 _1387 Psyr_1388: Psyr_1388 - Protein of unknown function UPF0066, at 1,570,005 to 1,570,697 _1388 Psyr_1389: Psyr_1389 - Protein of unknown function DUF1456, at 1,570,708 to 1,571,169 _1389 Psyr_1390: Psyr_1390 - RNA-binding S4, at 1,571,249 to 1,571,959 _1390 Psyr_1391: Psyr_1391 - GCN5-related N-acetyltransferase, at 1,572,052 to 1,572,492 _1391 Position (kb) 1570 1571 1572Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1569.906 kb on + strandat 1569.906 kb on + strandat 1569.906 kb on + strandat 1569.907 kb on - strandat 1570.052 kb on - strandat 1570.091 kb on - strand, within Psyr_1388at 1570.300 kb on + strand, within Psyr_1388at 1570.690 kb on + strandat 1570.690 kb on + strandat 1570.690 kb on + strandat 1570.691 kb on - strandat 1570.691 kb on - strandat 1570.691 kb on - strandat 1570.691 kb on - strandat 1570.909 kb on - strand, within Psyr_1389at 1570.973 kb on + strand, within Psyr_1389at 1571.024 kb on + strand, within Psyr_1389at 1571.025 kb on - strand, within Psyr_1389at 1571.135 kb on + strandat 1571.135 kb on + strandat 1571.136 kb on - strandat 1571.136 kb on - strandat 1571.136 kb on - strandat 1571.136 kb on - strandat 1571.152 kb on + strandat 1571.153 kb on - strandat 1571.186 kb on + strandat 1571.193 kb on + strandat 1571.226 kb on + strandat 1571.226 kb on + strandat 1571.227 kb on - strandat 1571.227 kb on - strandat 1571.227 kb on - strandat 1571.229 kb on + strandat 1571.229 kb on + strandat 1571.229 kb on + strandat 1571.230 kb on - strandat 1571.274 kb on + strandat 1571.275 kb on - strandat 1571.275 kb on - strandat 1571.466 kb on + strand, within Psyr_1390at 1571.466 kb on + strand, within Psyr_1390at 1571.466 kb on + strand, within Psyr_1390at 1571.467 kb on - strand, within Psyr_1390at 1571.467 kb on - strand, within Psyr_1390at 1571.467 kb on - strand, within Psyr_1390at 1571.467 kb on - strand, within Psyr_1390at 1571.532 kb on + strand, within Psyr_1390at 1571.533 kb on - strand, within Psyr_1390at 1571.533 kb on - strand, within Psyr_1390at 1571.533 kb on - strand, within Psyr_1390at 1571.679 kb on + strand, within Psyr_1390at 1571.679 kb on + strand, within Psyr_1390at 1571.679 kb on + strand, within Psyr_1390at 1571.680 kb on - strand, within Psyr_1390at 1571.680 kb on - strand, within Psyr_1390at 1571.978 kb on + strandat 1572.090 kb on - strandat 1572.169 kb on - strand, within Psyr_1391at 1572.169 kb on - strand, within Psyr_1391

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Conessine 10 mM
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1,569,906 + -0.3
1,569,906 + +0.4
1,569,906 + +3.2
1,569,907 - -0.5
1,570,052 - +4.2
1,570,091 - Psyr_1388 0.12 -0.1
1,570,300 + Psyr_1388 0.43 -2.2
1,570,690 + +0.2
1,570,690 + -0.7
1,570,690 + +0.2
1,570,691 - -1.8
1,570,691 - +0.4
1,570,691 - -0.1
1,570,691 - -0.7
1,570,909 - Psyr_1389 0.44 +2.5
1,570,973 + Psyr_1389 0.57 -1.2
1,571,024 + Psyr_1389 0.68 +0.2
1,571,025 - Psyr_1389 0.69 -1.4
1,571,135 + +1.2
1,571,135 + +0.2
1,571,136 - -0.1
1,571,136 - +0.2
1,571,136 - -0.1
1,571,136 - -2.5
1,571,152 + +1.4
1,571,153 - +1.6
1,571,186 + +2.0
1,571,193 + -0.3
1,571,226 + -1.5
1,571,226 + -1.2
1,571,227 - +0.5
1,571,227 - +0.4
1,571,227 - +1.4
1,571,229 + -1.7
1,571,229 + +0.6
1,571,229 + +0.8
1,571,230 - -0.3
1,571,274 + +1.2
1,571,275 - +1.9
1,571,275 - +0.4
1,571,466 + Psyr_1390 0.31 -0.6
1,571,466 + Psyr_1390 0.31 -1.7
1,571,466 + Psyr_1390 0.31 -1.0
1,571,467 - Psyr_1390 0.31 +0.0
1,571,467 - Psyr_1390 0.31 +0.7
1,571,467 - Psyr_1390 0.31 -0.4
1,571,467 - Psyr_1390 0.31 +0.5
1,571,532 + Psyr_1390 0.40 +1.2
1,571,533 - Psyr_1390 0.40 +0.6
1,571,533 - Psyr_1390 0.40 +0.6
1,571,533 - Psyr_1390 0.40 +1.2
1,571,679 + Psyr_1390 0.60 -0.1
1,571,679 + Psyr_1390 0.60 -0.8
1,571,679 + Psyr_1390 0.60 -1.0
1,571,680 - Psyr_1390 0.61 -0.1
1,571,680 - Psyr_1390 0.61 -3.8
1,571,978 + +0.2
1,572,090 - -0.6
1,572,169 - Psyr_1391 0.27 +0.7
1,572,169 - Psyr_1391 0.27 -1.3

Or see this region's nucleotide sequence