Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0902

Experiment: KB with Conessine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0900 and Psyr_0901 are separated by 57 nucleotidesPsyr_0901 and Psyr_0902 are separated by 42 nucleotidesPsyr_0902 and Psyr_0903 are separated by 179 nucleotides Psyr_0900: Psyr_0900 - TRAP dicarboxylate transporter- DctP subunit, at 1,019,056 to 1,020,081 _0900 Psyr_0901: Psyr_0901 - gluconolactonase, at 1,020,139 to 1,021,023 _0901 Psyr_0902: Psyr_0902 - conserved hypothetical protein, at 1,021,066 to 1,021,893 _0902 Psyr_0903: Psyr_0903 - outer membrane porin, at 1,022,073 to 1,023,341 _0903 Position (kb) 1021 1022Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1020.085 kb on + strandat 1020.086 kb on - strandat 1020.383 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.624 kb on - strand, within Psyr_0901at 1020.624 kb on - strand, within Psyr_0901at 1020.630 kb on - strand, within Psyr_0901at 1020.945 kb on - strandat 1021.112 kb on + strandat 1021.112 kb on + strandat 1021.196 kb on + strand, within Psyr_0902at 1021.196 kb on + strand, within Psyr_0902at 1021.197 kb on - strand, within Psyr_0902at 1021.197 kb on - strand, within Psyr_0902at 1021.197 kb on - strand, within Psyr_0902at 1021.197 kb on - strand, within Psyr_0902at 1021.256 kb on + strand, within Psyr_0902at 1021.257 kb on - strand, within Psyr_0902at 1021.286 kb on + strand, within Psyr_0902at 1021.286 kb on + strand, within Psyr_0902at 1021.286 kb on + strand, within Psyr_0902at 1021.418 kb on + strand, within Psyr_0902at 1021.418 kb on + strand, within Psyr_0902at 1021.419 kb on - strand, within Psyr_0902at 1021.460 kb on + strand, within Psyr_0902at 1021.460 kb on + strand, within Psyr_0902at 1021.460 kb on + strand, within Psyr_0902at 1021.461 kb on - strand, within Psyr_0902at 1021.461 kb on - strand, within Psyr_0902at 1021.461 kb on - strand, within Psyr_0902at 1021.463 kb on + strand, within Psyr_0902at 1021.463 kb on + strand, within Psyr_0902at 1021.463 kb on + strand, within Psyr_0902at 1021.463 kb on + strand, within Psyr_0902at 1021.463 kb on + strand, within Psyr_0902at 1021.464 kb on - strand, within Psyr_0902at 1021.464 kb on - strand, within Psyr_0902at 1021.464 kb on - strand, within Psyr_0902at 1021.464 kb on - strand, within Psyr_0902at 1021.464 kb on - strand, within Psyr_0902at 1021.464 kb on - strand, within Psyr_0902at 1021.514 kb on + strand, within Psyr_0902at 1021.515 kb on - strand, within Psyr_0902at 1021.515 kb on - strand, within Psyr_0902at 1021.515 kb on - strand, within Psyr_0902at 1021.584 kb on - strand, within Psyr_0902at 1021.584 kb on - strand, within Psyr_0902at 1021.584 kb on - strand, within Psyr_0902at 1021.584 kb on - strand, within Psyr_0902at 1021.605 kb on + strand, within Psyr_0902at 1021.606 kb on - strand, within Psyr_0902at 1021.606 kb on - strand, within Psyr_0902at 1021.693 kb on + strand, within Psyr_0902at 1021.693 kb on + strand, within Psyr_0902at 1021.693 kb on + strand, within Psyr_0902at 1021.694 kb on - strand, within Psyr_0902at 1021.694 kb on - strand, within Psyr_0902at 1021.694 kb on - strand, within Psyr_0902at 1021.816 kb on + strandat 1021.816 kb on + strandat 1021.816 kb on + strandat 1021.817 kb on - strandat 1021.817 kb on - strandat 1021.817 kb on - strandat 1021.817 kb on - strandat 1021.878 kb on + strandat 1021.878 kb on + strandat 1021.878 kb on + strandat 1021.878 kb on + strandat 1021.878 kb on + strandat 1021.879 kb on - strandat 1021.961 kb on + strandat 1021.990 kb on - strandat 1021.990 kb on - strandat 1022.029 kb on - strandat 1022.087 kb on + strandat 1022.087 kb on + strandat 1022.088 kb on - strandat 1022.088 kb on - strandat 1022.088 kb on - strandat 1022.088 kb on - strandat 1022.092 kb on + strandat 1022.197 kb on - strandat 1022.202 kb on - strand, within Psyr_0903at 1022.203 kb on + strand, within Psyr_0903at 1022.203 kb on + strand, within Psyr_0903at 1022.204 kb on - strand, within Psyr_0903at 1022.204 kb on - strand, within Psyr_0903at 1022.278 kb on + strand, within Psyr_0903at 1022.278 kb on + strand, within Psyr_0903at 1022.326 kb on + strand, within Psyr_0903at 1022.326 kb on + strand, within Psyr_0903at 1022.326 kb on + strand, within Psyr_0903at 1022.327 kb on - strand, within Psyr_0903at 1022.327 kb on - strand, within Psyr_0903at 1022.327 kb on - strand, within Psyr_0903at 1022.368 kb on + strand, within Psyr_0903at 1022.380 kb on + strand, within Psyr_0903at 1022.380 kb on + strand, within Psyr_0903at 1022.380 kb on + strand, within Psyr_0903at 1022.380 kb on + strand, within Psyr_0903at 1022.380 kb on + strand, within Psyr_0903at 1022.381 kb on - strand, within Psyr_0903at 1022.381 kb on - strand, within Psyr_0903at 1022.381 kb on - strand, within Psyr_0903at 1022.381 kb on - strand, within Psyr_0903at 1022.464 kb on + strand, within Psyr_0903at 1022.464 kb on + strand, within Psyr_0903at 1022.464 kb on + strand, within Psyr_0903at 1022.464 kb on + strand, within Psyr_0903at 1022.464 kb on + strand, within Psyr_0903at 1022.464 kb on + strand, within Psyr_0903at 1022.464 kb on + strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.503 kb on + strand, within Psyr_0903at 1022.564 kb on - strand, within Psyr_0903at 1022.564 kb on - strand, within Psyr_0903at 1022.564 kb on - strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.636 kb on - strand, within Psyr_0903at 1022.636 kb on - strand, within Psyr_0903at 1022.636 kb on - strand, within Psyr_0903at 1022.636 kb on - strand, within Psyr_0903at 1022.667 kb on + strand, within Psyr_0903at 1022.676 kb on - strand, within Psyr_0903at 1022.695 kb on + strand, within Psyr_0903at 1022.695 kb on + strand, within Psyr_0903at 1022.695 kb on + strand, within Psyr_0903at 1022.695 kb on + strand, within Psyr_0903at 1022.695 kb on + strand, within Psyr_0903at 1022.696 kb on - strand, within Psyr_0903at 1022.696 kb on - strand, within Psyr_0903at 1022.810 kb on - strand, within Psyr_0903

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Conessine 10 mM
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1,020,085 + -1.2
1,020,086 - +1.2
1,020,383 + Psyr_0901 0.28 +0.4
1,020,533 + Psyr_0901 0.45 +1.9
1,020,533 + Psyr_0901 0.45 -0.2
1,020,533 + Psyr_0901 0.45 -0.6
1,020,533 + Psyr_0901 0.45 +0.1
1,020,533 + Psyr_0901 0.45 -1.7
1,020,533 + Psyr_0901 0.45 -2.7
1,020,533 + Psyr_0901 0.45 -0.6
1,020,533 + Psyr_0901 0.45 -1.6
1,020,534 - Psyr_0901 0.45 -0.2
1,020,534 - Psyr_0901 0.45 +0.8
1,020,534 - Psyr_0901 0.45 +1.8
1,020,534 - Psyr_0901 0.45 +1.0
1,020,534 - Psyr_0901 0.45 +2.9
1,020,534 - Psyr_0901 0.45 +0.5
1,020,534 - Psyr_0901 0.45 +0.1
1,020,534 - Psyr_0901 0.45 +0.5
1,020,534 - Psyr_0901 0.45 +0.0
1,020,534 - Psyr_0901 0.45 +0.8
1,020,624 - Psyr_0901 0.55 -0.2
1,020,624 - Psyr_0901 0.55 +0.1
1,020,630 - Psyr_0901 0.55 -0.3
1,020,945 - -0.5
1,021,112 + -1.2
1,021,112 + -0.3
1,021,196 + Psyr_0902 0.16 -0.7
1,021,196 + Psyr_0902 0.16 -0.3
1,021,197 - Psyr_0902 0.16 -0.5
1,021,197 - Psyr_0902 0.16 -0.1
1,021,197 - Psyr_0902 0.16 -0.3
1,021,197 - Psyr_0902 0.16 -1.5
1,021,256 + Psyr_0902 0.23 -1.6
1,021,257 - Psyr_0902 0.23 -2.4
1,021,286 + Psyr_0902 0.27 -0.2
1,021,286 + Psyr_0902 0.27 -1.5
1,021,286 + Psyr_0902 0.27 +4.6
1,021,418 + Psyr_0902 0.43 +1.7
1,021,418 + Psyr_0902 0.43 -0.5
1,021,419 - Psyr_0902 0.43 +0.1
1,021,460 + Psyr_0902 0.48 +1.0
1,021,460 + Psyr_0902 0.48 -1.5
1,021,460 + Psyr_0902 0.48 +0.8
1,021,461 - Psyr_0902 0.48 -0.8
1,021,461 - Psyr_0902 0.48 -0.6
1,021,461 - Psyr_0902 0.48 +1.0
1,021,463 + Psyr_0902 0.48 -0.1
1,021,463 + Psyr_0902 0.48 -0.1
1,021,463 + Psyr_0902 0.48 -0.2
1,021,463 + Psyr_0902 0.48 +0.6
1,021,463 + Psyr_0902 0.48 -0.2
1,021,464 - Psyr_0902 0.48 -0.6
1,021,464 - Psyr_0902 0.48 -0.3
1,021,464 - Psyr_0902 0.48 -2.2
1,021,464 - Psyr_0902 0.48 +2.2
1,021,464 - Psyr_0902 0.48 +0.4
1,021,464 - Psyr_0902 0.48 -0.6
1,021,514 + Psyr_0902 0.54 -1.5
1,021,515 - Psyr_0902 0.54 -2.0
1,021,515 - Psyr_0902 0.54 +1.3
1,021,515 - Psyr_0902 0.54 -1.3
1,021,584 - Psyr_0902 0.63 -0.0
1,021,584 - Psyr_0902 0.63 -1.2
1,021,584 - Psyr_0902 0.63 -0.0
1,021,584 - Psyr_0902 0.63 -0.7
1,021,605 + Psyr_0902 0.65 +0.2
1,021,606 - Psyr_0902 0.65 -0.6
1,021,606 - Psyr_0902 0.65 -0.6
1,021,693 + Psyr_0902 0.76 -1.4
1,021,693 + Psyr_0902 0.76 -2.3
1,021,693 + Psyr_0902 0.76 -0.4
1,021,694 - Psyr_0902 0.76 +0.2
1,021,694 - Psyr_0902 0.76 +0.4
1,021,694 - Psyr_0902 0.76 +1.2
1,021,816 + +0.5
1,021,816 + +0.0
1,021,816 + -1.1
1,021,817 - -0.9
1,021,817 - -0.9
1,021,817 - -0.0
1,021,817 - +0.2
1,021,878 + +0.0
1,021,878 + -1.0
1,021,878 + -0.4
1,021,878 + -1.3
1,021,878 + -1.1
1,021,879 - -1.0
1,021,961 + +2.0
1,021,990 - +0.5
1,021,990 - -0.0
1,022,029 - +0.4
1,022,087 + +0.2
1,022,087 + -0.5
1,022,088 - +0.3
1,022,088 - -2.7
1,022,088 - +0.9
1,022,088 - +0.2
1,022,092 + +0.6
1,022,197 - -1.8
1,022,202 - Psyr_0903 0.10 +1.0
1,022,203 + Psyr_0903 0.10 +0.7
1,022,203 + Psyr_0903 0.10 +0.1
1,022,204 - Psyr_0903 0.10 +0.7
1,022,204 - Psyr_0903 0.10 -1.6
1,022,278 + Psyr_0903 0.16 +0.5
1,022,278 + Psyr_0903 0.16 +0.9
1,022,326 + Psyr_0903 0.20 +0.8
1,022,326 + Psyr_0903 0.20 +1.3
1,022,326 + Psyr_0903 0.20 -1.3
1,022,327 - Psyr_0903 0.20 -1.1
1,022,327 - Psyr_0903 0.20 -0.3
1,022,327 - Psyr_0903 0.20 +1.8
1,022,368 + Psyr_0903 0.23 -0.0
1,022,380 + Psyr_0903 0.24 +1.4
1,022,380 + Psyr_0903 0.24 -1.1
1,022,380 + Psyr_0903 0.24 +0.4
1,022,380 + Psyr_0903 0.24 +0.5
1,022,380 + Psyr_0903 0.24 +1.4
1,022,381 - Psyr_0903 0.24 -1.8
1,022,381 - Psyr_0903 0.24 -0.7
1,022,381 - Psyr_0903 0.24 -0.8
1,022,381 - Psyr_0903 0.24 -1.1
1,022,464 + Psyr_0903 0.31 -0.3
1,022,464 + Psyr_0903 0.31 +4.0
1,022,464 + Psyr_0903 0.31 +2.1
1,022,464 + Psyr_0903 0.31 +1.3
1,022,464 + Psyr_0903 0.31 -1.4
1,022,464 + Psyr_0903 0.31 +1.2
1,022,464 + Psyr_0903 0.31 +0.8
1,022,465 - Psyr_0903 0.31 +0.7
1,022,465 - Psyr_0903 0.31 -0.5
1,022,465 - Psyr_0903 0.31 -0.2
1,022,465 - Psyr_0903 0.31 +4.2
1,022,503 + Psyr_0903 0.34 -1.3
1,022,564 - Psyr_0903 0.39 +0.9
1,022,564 - Psyr_0903 0.39 +0.4
1,022,564 - Psyr_0903 0.39 +0.4
1,022,635 + Psyr_0903 0.44 +0.2
1,022,635 + Psyr_0903 0.44 +0.3
1,022,635 + Psyr_0903 0.44 +0.1
1,022,635 + Psyr_0903 0.44 -0.1
1,022,635 + Psyr_0903 0.44 -2.7
1,022,635 + Psyr_0903 0.44 +1.2
1,022,635 + Psyr_0903 0.44 -0.5
1,022,635 + Psyr_0903 0.44 -0.7
1,022,635 + Psyr_0903 0.44 +0.1
1,022,635 + Psyr_0903 0.44 -0.0
1,022,636 - Psyr_0903 0.44 -1.1
1,022,636 - Psyr_0903 0.44 -0.5
1,022,636 - Psyr_0903 0.44 -0.7
1,022,636 - Psyr_0903 0.44 -1.1
1,022,667 + Psyr_0903 0.47 -1.2
1,022,676 - Psyr_0903 0.48 -0.3
1,022,695 + Psyr_0903 0.49 +1.6
1,022,695 + Psyr_0903 0.49 -0.5
1,022,695 + Psyr_0903 0.49 -0.4
1,022,695 + Psyr_0903 0.49 +0.3
1,022,695 + Psyr_0903 0.49 -0.5
1,022,696 - Psyr_0903 0.49 -0.6
1,022,696 - Psyr_0903 0.49 +2.5
1,022,810 - Psyr_0903 0.58 +0.3

Or see this region's nucleotide sequence