Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0461

Experiment: KB with Conessine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0460 and Psyr_0461 are separated by 354 nucleotidesPsyr_0461 and Psyr_0462 are separated by 152 nucleotidesPsyr_0462 and Psyr_0463 are separated by 22 nucleotides Psyr_0460: Psyr_0460 - adenosylhomocysteinase, at 498,180 to 499,589 _0460 Psyr_0461: Psyr_0461 - Thioesterase superfamily, at 499,944 to 500,339 _0461 Psyr_0462: Psyr_0462 - Hydroxypyruvate isomerase, at 500,492 to 501,277 _0462 Psyr_0463: Psyr_0463 - Gluconate transporter, at 501,300 to 502,757 _0463 Position (kb) 499 500 501Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 499.746 kb on + strandat 499.746 kb on + strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.775 kb on - strandat 499.816 kb on + strandat 499.844 kb on + strandat 499.847 kb on + strandat 499.848 kb on - strandat 499.867 kb on + strandat 499.915 kb on - strandat 500.049 kb on + strand, within Psyr_0461at 500.050 kb on - strand, within Psyr_0461at 500.050 kb on - strand, within Psyr_0461at 500.070 kb on - strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.200 kb on + strand, within Psyr_0461at 500.201 kb on - strand, within Psyr_0461at 500.330 kb on - strandat 500.330 kb on - strandat 500.330 kb on - strandat 500.330 kb on - strandat 500.376 kb on + strandat 500.417 kb on + strandat 500.418 kb on - strandat 500.418 kb on - strandat 500.418 kb on - strandat 500.480 kb on + strandat 500.580 kb on + strand, within Psyr_0462at 500.617 kb on - strand, within Psyr_0462at 500.914 kb on - strand, within Psyr_0462at 500.914 kb on - strand, within Psyr_0462at 500.914 kb on - strand, within Psyr_0462at 501.001 kb on - strand, within Psyr_0462at 501.159 kb on + strand, within Psyr_0462at 501.159 kb on + strand, within Psyr_0462at 501.159 kb on + strand, within Psyr_0462at 501.160 kb on - strand, within Psyr_0462at 501.160 kb on - strand, within Psyr_0462at 501.160 kb on - strand, within Psyr_0462at 501.160 kb on - strand, within Psyr_0462at 501.160 kb on - strand, within Psyr_0462at 501.177 kb on + strand, within Psyr_0462at 501.177 kb on + strand, within Psyr_0462at 501.178 kb on - strand, within Psyr_0462at 501.280 kb on + strandat 501.280 kb on + strandat 501.280 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Conessine 10 mM
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499,746 + +0.7
499,746 + -1.7
499,747 - +1.5
499,747 - -0.2
499,747 - -0.4
499,747 - +0.4
499,775 - +0.6
499,816 + +2.5
499,844 + +1.1
499,847 + +1.8
499,848 - +0.6
499,867 + +1.5
499,915 - -0.7
500,049 + Psyr_0461 0.27 -0.2
500,050 - Psyr_0461 0.27 -0.3
500,050 - Psyr_0461 0.27 +0.9
500,070 - Psyr_0461 0.32 +0.1
500,091 + Psyr_0461 0.37 -0.4
500,091 + Psyr_0461 0.37 +0.1
500,091 + Psyr_0461 0.37 +1.0
500,091 + Psyr_0461 0.37 -0.6
500,091 + Psyr_0461 0.37 -2.0
500,091 + Psyr_0461 0.37 -0.6
500,091 + Psyr_0461 0.37 +0.8
500,091 + Psyr_0461 0.37 +0.8
500,091 + Psyr_0461 0.37 +3.1
500,091 + Psyr_0461 0.37 -4.0
500,091 + Psyr_0461 0.37 +0.1
500,091 + Psyr_0461 0.37 +0.1
500,091 + Psyr_0461 0.37 -0.5
500,091 + Psyr_0461 0.37 -0.6
500,092 - Psyr_0461 0.37 -0.5
500,092 - Psyr_0461 0.37 -0.6
500,092 - Psyr_0461 0.37 +0.7
500,092 - Psyr_0461 0.37 +0.1
500,092 - Psyr_0461 0.37 -0.3
500,092 - Psyr_0461 0.37 -0.9
500,092 - Psyr_0461 0.37 +0.6
500,092 - Psyr_0461 0.37 -0.7
500,092 - Psyr_0461 0.37 -0.9
500,092 - Psyr_0461 0.37 +0.1
500,092 - Psyr_0461 0.37 +0.2
500,092 - Psyr_0461 0.37 -0.6
500,092 - Psyr_0461 0.37 +2.0
500,092 - Psyr_0461 0.37 +1.0
500,092 - Psyr_0461 0.37 -2.3
500,200 + Psyr_0461 0.65 +1.9
500,201 - Psyr_0461 0.65 +1.1
500,330 - -0.2
500,330 - -1.1
500,330 - -2.2
500,330 - -0.4
500,376 + +0.5
500,417 + -0.6
500,418 - +1.3
500,418 - -0.2
500,418 - -0.6
500,480 + +0.8
500,580 + Psyr_0462 0.11 +2.7
500,617 - Psyr_0462 0.16 +1.5
500,914 - Psyr_0462 0.54 +2.5
500,914 - Psyr_0462 0.54 -0.3
500,914 - Psyr_0462 0.54 -0.1
501,001 - Psyr_0462 0.65 -0.8
501,159 + Psyr_0462 0.85 -0.6
501,159 + Psyr_0462 0.85 +1.9
501,159 + Psyr_0462 0.85 -0.4
501,160 - Psyr_0462 0.85 +0.9
501,160 - Psyr_0462 0.85 +0.5
501,160 - Psyr_0462 0.85 -0.3
501,160 - Psyr_0462 0.85 -0.2
501,160 - Psyr_0462 0.85 -0.2
501,177 + Psyr_0462 0.87 -0.7
501,177 + Psyr_0462 0.87 +0.1
501,178 - Psyr_0462 0.87 -0.6
501,280 + -1.1
501,280 + +0.4
501,280 + +1.1

Or see this region's nucleotide sequence