Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0438

Experiment: KB with Conessine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0435 and Psyr_0436 overlap by 4 nucleotidesPsyr_0436 and Psyr_0437 are separated by 9 nucleotidesPsyr_0437 and Psyr_0438 overlap by 26 nucleotidesPsyr_0438 and Psyr_0439 overlap by 25 nucleotides Psyr_0435: Psyr_0435 - membrane protein, putative, at 474,481 to 475,026 _0435 Psyr_0436: Psyr_0436 - Phosphopantetheine-binding protein, at 475,023 to 475,277 _0436 Psyr_0437: Psyr_0437 - acyl carrier protein, putative, at 475,287 to 475,547 _0437 Psyr_0438: Psyr_0438 - Phospholipid/glycerol acyltransferase, at 475,522 to 476,334 _0438 Psyr_0439: Psyr_0439 - conserved hypothetical protein, at 476,310 to 477,029 _0439 Position (kb) 475 476 477Strain fitness (log2 ratio) -2 -1 0 1 2 3at 474.566 kb on + strand, within Psyr_0435at 474.567 kb on - strand, within Psyr_0435at 474.669 kb on - strand, within Psyr_0435at 474.737 kb on + strand, within Psyr_0435at 474.738 kb on - strand, within Psyr_0435at 474.965 kb on + strand, within Psyr_0435at 474.965 kb on + strand, within Psyr_0435at 475.049 kb on - strand, within Psyr_0436at 475.049 kb on - strand, within Psyr_0436at 475.059 kb on + strand, within Psyr_0436at 475.059 kb on + strand, within Psyr_0436at 475.059 kb on + strand, within Psyr_0436at 475.060 kb on - strand, within Psyr_0436at 475.060 kb on - strand, within Psyr_0436at 475.460 kb on + strand, within Psyr_0437at 475.460 kb on + strand, within Psyr_0437at 475.523 kb on + strandat 475.523 kb on + strandat 475.523 kb on + strandat 475.524 kb on - strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.572 kb on - strandat 475.572 kb on - strandat 475.572 kb on - strandat 475.583 kb on + strandat 475.621 kb on + strand, within Psyr_0438at 475.645 kb on + strand, within Psyr_0438at 475.645 kb on + strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.920 kb on - strand, within Psyr_0438at 475.920 kb on - strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.288 kb on + strandat 476.288 kb on + strandat 476.288 kb on + strandat 476.288 kb on + strandat 476.291 kb on + strandat 476.291 kb on + strandat 476.291 kb on + strandat 476.291 kb on + strandat 476.292 kb on - strandat 476.527 kb on + strand, within Psyr_0439at 476.527 kb on + strand, within Psyr_0439at 476.528 kb on - strand, within Psyr_0439at 476.528 kb on - strand, within Psyr_0439at 476.614 kb on + strand, within Psyr_0439at 476.615 kb on - strand, within Psyr_0439at 476.692 kb on - strand, within Psyr_0439at 476.692 kb on - strand, within Psyr_0439at 476.692 kb on - strand, within Psyr_0439at 477.066 kb on + strandat 477.067 kb on - strandat 477.123 kb on + strandat 477.141 kb on + strandat 477.141 kb on + strandat 477.141 kb on + strandat 477.142 kb on - strandat 477.145 kb on - strandat 477.157 kb on - strandat 477.160 kb on + strandat 477.161 kb on - strandat 477.182 kb on - strandat 477.182 kb on - strandat 477.187 kb on - strandat 477.256 kb on + strandat 477.256 kb on + strandat 477.257 kb on - strandat 477.257 kb on - strandat 477.257 kb on - strandat 477.257 kb on - strandat 477.257 kb on - strandat 477.284 kb on + strandat 477.285 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Conessine 10 mM
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474,566 + Psyr_0435 0.16 -0.4
474,567 - Psyr_0435 0.16 -1.0
474,669 - Psyr_0435 0.34 +2.1
474,737 + Psyr_0435 0.47 -0.5
474,738 - Psyr_0435 0.47 -1.0
474,965 + Psyr_0435 0.89 +1.1
474,965 + Psyr_0435 0.89 +1.3
475,049 - Psyr_0436 0.10 +0.5
475,049 - Psyr_0436 0.10 -1.7
475,059 + Psyr_0436 0.14 +2.0
475,059 + Psyr_0436 0.14 -1.8
475,059 + Psyr_0436 0.14 +0.5
475,060 - Psyr_0436 0.15 +1.1
475,060 - Psyr_0436 0.15 +0.5
475,460 + Psyr_0437 0.66 -0.9
475,460 + Psyr_0437 0.66 +0.1
475,523 + +0.1
475,523 + +1.0
475,523 + +0.7
475,524 - +0.4
475,571 + +0.4
475,571 + +1.1
475,571 + +0.7
475,571 + +1.5
475,571 + -0.7
475,572 - +0.1
475,572 - -0.7
475,572 - -0.4
475,583 + +0.8
475,621 + Psyr_0438 0.12 -0.2
475,645 + Psyr_0438 0.15 -0.7
475,645 + Psyr_0438 0.15 -1.0
475,646 - Psyr_0438 0.15 -0.3
475,646 - Psyr_0438 0.15 +0.1
475,646 - Psyr_0438 0.15 -0.2
475,920 - Psyr_0438 0.49 +0.7
475,920 - Psyr_0438 0.49 +1.0
476,093 + Psyr_0438 0.70 -0.1
476,093 + Psyr_0438 0.70 +0.4
476,093 + Psyr_0438 0.70 -1.3
476,093 + Psyr_0438 0.70 +1.6
476,093 + Psyr_0438 0.70 +0.3
476,093 + Psyr_0438 0.70 +0.6
476,094 - Psyr_0438 0.70 +1.1
476,094 - Psyr_0438 0.70 +0.7
476,094 - Psyr_0438 0.70 +1.2
476,094 - Psyr_0438 0.70 -0.2
476,094 - Psyr_0438 0.70 -0.9
476,288 + +0.2
476,288 + +1.0
476,288 + +0.5
476,288 + +0.1
476,291 + -0.6
476,291 + -0.7
476,291 + -0.4
476,291 + -0.7
476,292 - -1.1
476,527 + Psyr_0439 0.30 -0.0
476,527 + Psyr_0439 0.30 +0.4
476,528 - Psyr_0439 0.30 -0.6
476,528 - Psyr_0439 0.30 +0.8
476,614 + Psyr_0439 0.42 -0.4
476,615 - Psyr_0439 0.42 +0.4
476,692 - Psyr_0439 0.53 -0.4
476,692 - Psyr_0439 0.53 +0.4
476,692 - Psyr_0439 0.53 +1.3
477,066 + -0.6
477,067 - -0.1
477,123 + -0.2
477,141 + +0.3
477,141 + +1.6
477,141 + +0.8
477,142 - -0.7
477,145 - -1.4
477,157 - +3.1
477,160 + +0.2
477,161 - -1.6
477,182 - -0.2
477,182 - -0.3
477,187 - +0.9
477,256 + -0.8
477,256 + -0.1
477,257 - +1.1
477,257 - -0.3
477,257 - +1.0
477,257 - -0.2
477,257 - +0.4
477,284 + -0.9
477,285 - +0.3

Or see this region's nucleotide sequence