Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0250

Experiment: KB with Conessine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0249 and Psyr_0250 are separated by 110 nucleotidesPsyr_0250 and Psyr_0251 are separated by 89 nucleotidesPsyr_0251 and Psyr_0252 are separated by 313 nucleotides Psyr_0249: Psyr_0249 - type II secretion system protein E:General secretory system II, protein E, N-terminal, at 261,709 to 263,493 _0249 Psyr_0250: Psyr_0250 - conserved hypothetical protein, at 263,604 to 263,987 _0250 Psyr_0251: Psyr_0251 - transcriptional regulator, AsnC family, at 264,077 to 264,547 _0251 Psyr_0252: Psyr_0252 - adenylate cyclase, at 264,861 to 266,315 _0252 Position (kb) 263 264Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 262.845 kb on - strand, within Psyr_0249at 263.102 kb on + strand, within Psyr_0249at 263.103 kb on - strand, within Psyr_0249at 263.103 kb on - strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.237 kb on + strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.238 kb on - strand, within Psyr_0249at 263.414 kb on + strandat 263.414 kb on + strandat 263.415 kb on - strandat 263.538 kb on - strandat 263.538 kb on - strandat 263.568 kb on + strandat 263.569 kb on - strandat 263.569 kb on - strandat 263.569 kb on - strandat 263.569 kb on - strandat 263.569 kb on - strandat 263.803 kb on + strand, within Psyr_0250at 263.804 kb on - strand, within Psyr_0250at 263.804 kb on - strand, within Psyr_0250at 263.804 kb on - strand, within Psyr_0250at 263.906 kb on + strand, within Psyr_0250at 263.907 kb on - strand, within Psyr_0250at 263.907 kb on - strand, within Psyr_0250at 263.957 kb on + strandat 263.957 kb on + strandat 263.957 kb on + strandat 264.033 kb on - strandat 264.059 kb on + strandat 264.060 kb on - strandat 264.072 kb on + strandat 264.077 kb on - strandat 264.098 kb on + strandat 264.099 kb on - strandat 264.099 kb on - strandat 264.282 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.651 kb on - strandat 264.651 kb on - strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.672 kb on - strandat 264.672 kb on - strandat 264.672 kb on - strandat 264.672 kb on - strandat 264.672 kb on - strandat 264.784 kb on + strandat 264.785 kb on - strandat 264.785 kb on - strandat 264.841 kb on + strandat 264.842 kb on - strandat 264.862 kb on + strandat 264.862 kb on + strandat 264.862 kb on + strandat 264.862 kb on + strandat 264.862 kb on + strandat 264.862 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Conessine 10 mM
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262,845 - Psyr_0249 0.64 -0.6
263,102 + Psyr_0249 0.78 +1.9
263,103 - Psyr_0249 0.78 -1.1
263,103 - Psyr_0249 0.78 +1.5
263,237 + Psyr_0249 0.86 +1.8
263,237 + Psyr_0249 0.86 +0.8
263,237 + Psyr_0249 0.86 +0.0
263,237 + Psyr_0249 0.86 -1.3
263,237 + Psyr_0249 0.86 +1.2
263,237 + Psyr_0249 0.86 +1.7
263,237 + Psyr_0249 0.86 +1.7
263,237 + Psyr_0249 0.86 +0.3
263,237 + Psyr_0249 0.86 -3.1
263,237 + Psyr_0249 0.86 +0.8
263,237 + Psyr_0249 0.86 +0.7
263,237 + Psyr_0249 0.86 +0.1
263,237 + Psyr_0249 0.86 +0.2
263,237 + Psyr_0249 0.86 -0.5
263,237 + Psyr_0249 0.86 -1.6
263,237 + Psyr_0249 0.86 -1.3
263,237 + Psyr_0249 0.86 +1.3
263,238 - Psyr_0249 0.86 -1.8
263,238 - Psyr_0249 0.86 +1.2
263,238 - Psyr_0249 0.86 +1.1
263,238 - Psyr_0249 0.86 +0.1
263,238 - Psyr_0249 0.86 -0.2
263,238 - Psyr_0249 0.86 -1.3
263,238 - Psyr_0249 0.86 +1.8
263,238 - Psyr_0249 0.86 +0.1
263,238 - Psyr_0249 0.86 -0.8
263,238 - Psyr_0249 0.86 -0.7
263,414 + +1.0
263,414 + +1.4
263,415 - -1.0
263,538 - -0.3
263,538 - +0.4
263,568 + -0.5
263,569 - +0.4
263,569 - -0.8
263,569 - +0.2
263,569 - +0.5
263,569 - -0.3
263,803 + Psyr_0250 0.52 +1.1
263,804 - Psyr_0250 0.52 +0.6
263,804 - Psyr_0250 0.52 -0.5
263,804 - Psyr_0250 0.52 +0.8
263,906 + Psyr_0250 0.79 +0.5
263,907 - Psyr_0250 0.79 +2.0
263,907 - Psyr_0250 0.79 -2.0
263,957 + +0.7
263,957 + -1.8
263,957 + -1.6
264,033 - +1.0
264,059 + +0.7
264,060 - +2.8
264,072 + +2.1
264,077 - +0.5
264,098 + +0.5
264,099 - -0.6
264,099 - -3.2
264,282 + Psyr_0251 0.44 +0.4
264,374 + Psyr_0251 0.63 +2.0
264,374 + Psyr_0251 0.63 -0.3
264,374 + Psyr_0251 0.63 +1.0
264,374 + Psyr_0251 0.63 +0.1
264,374 + Psyr_0251 0.63 +0.4
264,374 + Psyr_0251 0.63 -1.0
264,374 + Psyr_0251 0.63 -1.6
264,374 + Psyr_0251 0.63 -1.1
264,374 + Psyr_0251 0.63 -0.8
264,375 - Psyr_0251 0.63 -0.5
264,375 - Psyr_0251 0.63 -0.5
264,375 - Psyr_0251 0.63 +0.2
264,375 - Psyr_0251 0.63 +0.3
264,375 - Psyr_0251 0.63 -1.6
264,375 - Psyr_0251 0.63 -0.0
264,375 - Psyr_0251 0.63 -0.4
264,375 - Psyr_0251 0.63 -1.0
264,375 - Psyr_0251 0.63 +0.9
264,375 - Psyr_0251 0.63 -1.0
264,651 - +1.1
264,651 - -0.9
264,671 + +0.8
264,671 + +0.0
264,671 + -1.4
264,671 + -0.8
264,671 + -1.9
264,671 + +2.2
264,671 + +1.2
264,671 + +1.2
264,672 - -0.3
264,672 - -0.9
264,672 - -1.3
264,672 - +0.3
264,672 - -0.2
264,784 + -1.0
264,785 - +2.2
264,785 - +1.1
264,841 + +1.7
264,842 - +0.0
264,862 + +1.0
264,862 + -1.2
264,862 + +0.2
264,862 + -0.5
264,862 + -0.7
264,862 + -0.4

Or see this region's nucleotide sequence