Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0138

Experiment: KB with Conessine 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0136 and Psyr_0137 overlap by 1 nucleotidesPsyr_0137 and Psyr_0138 are separated by 210 nucleotidesPsyr_0138 and Psyr_0139 are separated by 144 nucleotides Psyr_0136: Psyr_0136 - outer membrane transport energization protein ExbB, at 145,279 to 145,986 _0136 Psyr_0137: Psyr_0137 - outer membrane transport energization protein ExbD, at 145,986 to 146,387 _0137 Psyr_0138: Psyr_0138 - TonB-dependent receptor:TonB-dependent receptor, at 146,598 to 149,312 _0138 Psyr_0139: Psyr_0139 - extracellular solute-binding protein, family 5, at 149,457 to 151,340 _0139 Position (kb) 146 147 148 149 150Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 145.607 kb on + strand, within Psyr_0136at 145.607 kb on + strand, within Psyr_0136at 145.608 kb on - strand, within Psyr_0136at 145.834 kb on + strand, within Psyr_0136at 145.834 kb on + strand, within Psyr_0136at 145.834 kb on + strand, within Psyr_0136at 145.835 kb on - strand, within Psyr_0136at 145.932 kb on + strandat 145.984 kb on + strandat 145.984 kb on + strandat 145.985 kb on - strandat 145.985 kb on - strandat 145.985 kb on - strandat 146.199 kb on + strand, within Psyr_0137at 146.200 kb on - strand, within Psyr_0137at 146.200 kb on - strand, within Psyr_0137at 146.310 kb on + strand, within Psyr_0137at 146.365 kb on + strandat 146.366 kb on - strandat 146.723 kb on + strandat 146.788 kb on + strandat 146.788 kb on + strandat 146.788 kb on + strandat 146.789 kb on - strandat 146.789 kb on - strandat 146.843 kb on + strandat 146.844 kb on - strandat 147.320 kb on + strand, within Psyr_0138at 147.342 kb on + strand, within Psyr_0138at 147.342 kb on + strand, within Psyr_0138at 147.342 kb on + strand, within Psyr_0138at 147.342 kb on + strand, within Psyr_0138at 147.343 kb on - strand, within Psyr_0138at 147.343 kb on - strand, within Psyr_0138at 147.343 kb on - strand, within Psyr_0138at 147.343 kb on - strand, within Psyr_0138at 147.343 kb on - strand, within Psyr_0138at 147.393 kb on + strand, within Psyr_0138at 147.393 kb on + strand, within Psyr_0138at 147.393 kb on + strand, within Psyr_0138at 147.393 kb on + strand, within Psyr_0138at 147.393 kb on + strand, within Psyr_0138at 147.393 kb on + strand, within Psyr_0138at 147.394 kb on - strand, within Psyr_0138at 147.394 kb on - strand, within Psyr_0138at 147.394 kb on - strand, within Psyr_0138at 147.398 kb on - strand, within Psyr_0138at 147.398 kb on - strand, within Psyr_0138at 147.546 kb on + strand, within Psyr_0138at 147.547 kb on - strand, within Psyr_0138at 147.547 kb on - strand, within Psyr_0138at 147.547 kb on - strand, within Psyr_0138at 147.547 kb on - strand, within Psyr_0138at 147.547 kb on - strand, within Psyr_0138at 147.636 kb on + strand, within Psyr_0138at 147.636 kb on + strand, within Psyr_0138at 147.636 kb on + strand, within Psyr_0138at 147.636 kb on + strand, within Psyr_0138at 147.636 kb on + strand, within Psyr_0138at 147.637 kb on - strand, within Psyr_0138at 147.720 kb on + strand, within Psyr_0138at 147.836 kb on + strand, within Psyr_0138at 147.836 kb on + strand, within Psyr_0138at 147.888 kb on + strand, within Psyr_0138at 147.888 kb on + strand, within Psyr_0138at 147.888 kb on + strand, within Psyr_0138at 147.889 kb on - strand, within Psyr_0138at 147.906 kb on + strand, within Psyr_0138at 147.907 kb on - strand, within Psyr_0138at 147.907 kb on - strand, within Psyr_0138at 147.907 kb on - strand, within Psyr_0138at 147.907 kb on - strand, within Psyr_0138at 147.907 kb on - strand, within Psyr_0138at 147.907 kb on - strand, within Psyr_0138at 147.945 kb on + strand, within Psyr_0138at 147.945 kb on + strand, within Psyr_0138at 147.945 kb on + strand, within Psyr_0138at 147.945 kb on + strand, within Psyr_0138at 147.946 kb on - strand, within Psyr_0138at 147.946 kb on - strand, within Psyr_0138at 147.946 kb on - strand, within Psyr_0138at 147.946 kb on - strand, within Psyr_0138at 147.946 kb on - strand, within Psyr_0138at 147.947 kb on + strand, within Psyr_0138at 147.947 kb on + strand, within Psyr_0138at 147.947 kb on + strand, within Psyr_0138at 147.947 kb on + strand, within Psyr_0138at 147.947 kb on + strand, within Psyr_0138at 147.948 kb on - strand, within Psyr_0138at 147.948 kb on - strand, within Psyr_0138at 147.948 kb on - strand, within Psyr_0138at 147.948 kb on - strand, within Psyr_0138at 147.948 kb on - strand, within Psyr_0138at 147.948 kb on - strand, within Psyr_0138at 147.948 kb on - strand, within Psyr_0138at 147.968 kb on + strand, within Psyr_0138at 147.969 kb on - strand, within Psyr_0138at 148.047 kb on + strand, within Psyr_0138at 148.047 kb on + strand, within Psyr_0138at 148.048 kb on - strand, within Psyr_0138at 148.153 kb on + strand, within Psyr_0138at 148.153 kb on + strand, within Psyr_0138at 148.341 kb on + strand, within Psyr_0138at 148.341 kb on + strand, within Psyr_0138at 148.341 kb on + strand, within Psyr_0138at 148.341 kb on + strand, within Psyr_0138at 148.341 kb on + strand, within Psyr_0138at 148.341 kb on + strand, within Psyr_0138at 148.341 kb on + strand, within Psyr_0138at 148.342 kb on - strand, within Psyr_0138at 148.342 kb on - strand, within Psyr_0138at 148.342 kb on - strand, within Psyr_0138at 148.342 kb on - strand, within Psyr_0138at 148.342 kb on - strand, within Psyr_0138at 148.375 kb on - strand, within Psyr_0138at 148.422 kb on + strand, within Psyr_0138at 148.452 kb on + strand, within Psyr_0138at 148.453 kb on - strand, within Psyr_0138at 148.453 kb on - strand, within Psyr_0138at 148.461 kb on + strand, within Psyr_0138at 148.462 kb on - strand, within Psyr_0138at 148.485 kb on - strand, within Psyr_0138at 148.495 kb on - strand, within Psyr_0138at 148.497 kb on + strand, within Psyr_0138at 148.497 kb on + strand, within Psyr_0138at 148.497 kb on + strand, within Psyr_0138at 148.498 kb on - strand, within Psyr_0138at 148.498 kb on - strand, within Psyr_0138at 148.498 kb on - strand, within Psyr_0138at 148.498 kb on - strand, within Psyr_0138at 148.498 kb on - strand, within Psyr_0138at 148.498 kb on - strand, within Psyr_0138at 148.498 kb on - strand, within Psyr_0138at 148.498 kb on - strand, within Psyr_0138at 148.498 kb on - strand, within Psyr_0138at 148.498 kb on - strand, within Psyr_0138at 148.498 kb on - strand, within Psyr_0138at 148.644 kb on + strand, within Psyr_0138at 148.645 kb on - strand, within Psyr_0138at 148.749 kb on - strand, within Psyr_0138at 148.849 kb on + strand, within Psyr_0138at 148.850 kb on - strand, within Psyr_0138at 148.914 kb on + strand, within Psyr_0138at 148.914 kb on + strand, within Psyr_0138at 148.914 kb on + strand, within Psyr_0138at 148.914 kb on + strand, within Psyr_0138at 148.914 kb on + strand, within Psyr_0138at 148.914 kb on + strand, within Psyr_0138at 148.914 kb on + strand, within Psyr_0138at 148.914 kb on + strand, within Psyr_0138at 148.914 kb on + strand, within Psyr_0138at 148.915 kb on - strand, within Psyr_0138at 148.915 kb on - strand, within Psyr_0138at 148.915 kb on - strand, within Psyr_0138at 148.915 kb on - strand, within Psyr_0138at 148.915 kb on - strand, within Psyr_0138at 148.915 kb on - strand, within Psyr_0138at 148.915 kb on - strand, within Psyr_0138at 148.915 kb on - strand, within Psyr_0138at 148.915 kb on - strand, within Psyr_0138at 148.956 kb on + strand, within Psyr_0138at 148.956 kb on + strand, within Psyr_0138at 148.957 kb on - strand, within Psyr_0138at 148.957 kb on - strand, within Psyr_0138at 149.025 kb on - strand, within Psyr_0138at 149.089 kb on - strandat 149.122 kb on - strandat 149.150 kb on + strandat 149.150 kb on + strandat 149.150 kb on + strandat 149.192 kb on + strandat 149.192 kb on + strandat 149.192 kb on + strandat 149.192 kb on + strandat 149.193 kb on - strandat 149.229 kb on + strandat 149.230 kb on - strandat 149.440 kb on - strandat 149.604 kb on + strandat 149.604 kb on + strandat 149.604 kb on + strandat 149.604 kb on + strandat 149.605 kb on - strandat 149.674 kb on - strand, within Psyr_0139at 149.674 kb on - strand, within Psyr_0139at 149.674 kb on - strand, within Psyr_0139at 149.674 kb on - strand, within Psyr_0139at 149.685 kb on + strand, within Psyr_0139at 149.730 kb on + strand, within Psyr_0139at 149.731 kb on - strand, within Psyr_0139at 149.731 kb on - strand, within Psyr_0139at 149.731 kb on - strand, within Psyr_0139at 149.731 kb on - strand, within Psyr_0139at 149.767 kb on - strand, within Psyr_0139at 149.775 kb on + strand, within Psyr_0139at 149.893 kb on - strand, within Psyr_0139at 149.893 kb on - strand, within Psyr_0139at 150.219 kb on + strand, within Psyr_0139at 150.219 kb on + strand, within Psyr_0139at 150.219 kb on + strand, within Psyr_0139at 150.220 kb on - strand, within Psyr_0139at 150.246 kb on + strand, within Psyr_0139at 150.246 kb on + strand, within Psyr_0139at 150.246 kb on + strand, within Psyr_0139at 150.246 kb on + strand, within Psyr_0139at 150.246 kb on + strand, within Psyr_0139at 150.246 kb on + strand, within Psyr_0139at 150.246 kb on + strand, within Psyr_0139at 150.246 kb on + strand, within Psyr_0139at 150.247 kb on - strand, within Psyr_0139at 150.247 kb on - strand, within Psyr_0139at 150.247 kb on - strand, within Psyr_0139at 150.247 kb on - strand, within Psyr_0139at 150.247 kb on - strand, within Psyr_0139at 150.247 kb on - strand, within Psyr_0139at 150.247 kb on - strand, within Psyr_0139at 150.247 kb on - strand, within Psyr_0139at 150.247 kb on - strand, within Psyr_0139at 150.247 kb on - strand, within Psyr_0139at 150.247 kb on - strand, within Psyr_0139at 150.247 kb on - strand, within Psyr_0139at 150.250 kb on - strand, within Psyr_0139at 150.250 kb on - strand, within Psyr_0139at 150.300 kb on + strand, within Psyr_0139at 150.301 kb on - strand, within Psyr_0139at 150.301 kb on - strand, within Psyr_0139

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Conessine 10 mM
remove
145,607 + Psyr_0136 0.46 +0.9
145,607 + Psyr_0136 0.46 +0.9
145,608 - Psyr_0136 0.46 +0.5
145,834 + Psyr_0136 0.78 +0.1
145,834 + Psyr_0136 0.78 +1.0
145,834 + Psyr_0136 0.78 -2.0
145,835 - Psyr_0136 0.79 -2.0
145,932 + -0.1
145,984 + +0.2
145,984 + -1.2
145,985 - -1.3
145,985 - -1.8
145,985 - +0.5
146,199 + Psyr_0137 0.53 +0.3
146,200 - Psyr_0137 0.53 +2.5
146,200 - Psyr_0137 0.53 -1.0
146,310 + Psyr_0137 0.81 +1.2
146,365 + -1.9
146,366 - -0.5
146,723 + +3.7
146,788 + -1.4
146,788 + -1.6
146,788 + -0.5
146,789 - -1.1
146,789 - -0.9
146,843 + -0.5
146,844 - -0.2
147,320 + Psyr_0138 0.27 -1.0
147,342 + Psyr_0138 0.27 -0.2
147,342 + Psyr_0138 0.27 -1.2
147,342 + Psyr_0138 0.27 +1.0
147,342 + Psyr_0138 0.27 +0.0
147,343 - Psyr_0138 0.27 +0.2
147,343 - Psyr_0138 0.27 +1.3
147,343 - Psyr_0138 0.27 -0.5
147,343 - Psyr_0138 0.27 +1.1
147,343 - Psyr_0138 0.27 -1.1
147,393 + Psyr_0138 0.29 -0.2
147,393 + Psyr_0138 0.29 -0.3
147,393 + Psyr_0138 0.29 -1.0
147,393 + Psyr_0138 0.29 +0.2
147,393 + Psyr_0138 0.29 +0.1
147,393 + Psyr_0138 0.29 -0.3
147,394 - Psyr_0138 0.29 +0.9
147,394 - Psyr_0138 0.29 +0.9
147,394 - Psyr_0138 0.29 +0.7
147,398 - Psyr_0138 0.29 -0.1
147,398 - Psyr_0138 0.29 -0.2
147,546 + Psyr_0138 0.35 -0.4
147,547 - Psyr_0138 0.35 +1.1
147,547 - Psyr_0138 0.35 -0.1
147,547 - Psyr_0138 0.35 +0.6
147,547 - Psyr_0138 0.35 +1.0
147,547 - Psyr_0138 0.35 -1.0
147,636 + Psyr_0138 0.38 +0.4
147,636 + Psyr_0138 0.38 +0.6
147,636 + Psyr_0138 0.38 +0.1
147,636 + Psyr_0138 0.38 -0.3
147,636 + Psyr_0138 0.38 +1.0
147,637 - Psyr_0138 0.38 +2.8
147,720 + Psyr_0138 0.41 +0.3
147,836 + Psyr_0138 0.46 -0.5
147,836 + Psyr_0138 0.46 -0.9
147,888 + Psyr_0138 0.48 +0.9
147,888 + Psyr_0138 0.48 -0.4
147,888 + Psyr_0138 0.48 -0.2
147,889 - Psyr_0138 0.48 -0.6
147,906 + Psyr_0138 0.48 +0.4
147,907 - Psyr_0138 0.48 +0.4
147,907 - Psyr_0138 0.48 -0.9
147,907 - Psyr_0138 0.48 -2.8
147,907 - Psyr_0138 0.48 -0.8
147,907 - Psyr_0138 0.48 -0.8
147,907 - Psyr_0138 0.48 +1.1
147,945 + Psyr_0138 0.50 -1.0
147,945 + Psyr_0138 0.50 -0.9
147,945 + Psyr_0138 0.50 -0.7
147,945 + Psyr_0138 0.50 -1.4
147,946 - Psyr_0138 0.50 +0.4
147,946 - Psyr_0138 0.50 +0.0
147,946 - Psyr_0138 0.50 +1.6
147,946 - Psyr_0138 0.50 -0.2
147,946 - Psyr_0138 0.50 +0.8
147,947 + Psyr_0138 0.50 -0.3
147,947 + Psyr_0138 0.50 +1.2
147,947 + Psyr_0138 0.50 -0.0
147,947 + Psyr_0138 0.50 +1.1
147,947 + Psyr_0138 0.50 -0.1
147,948 - Psyr_0138 0.50 -2.4
147,948 - Psyr_0138 0.50 +0.4
147,948 - Psyr_0138 0.50 +0.8
147,948 - Psyr_0138 0.50 +0.6
147,948 - Psyr_0138 0.50 -1.1
147,948 - Psyr_0138 0.50 -1.2
147,948 - Psyr_0138 0.50 +2.2
147,968 + Psyr_0138 0.50 -0.5
147,969 - Psyr_0138 0.50 +1.4
148,047 + Psyr_0138 0.53 +1.9
148,047 + Psyr_0138 0.53 +0.5
148,048 - Psyr_0138 0.53 -0.4
148,153 + Psyr_0138 0.57 -0.1
148,153 + Psyr_0138 0.57 +0.4
148,341 + Psyr_0138 0.64 -1.2
148,341 + Psyr_0138 0.64 +0.6
148,341 + Psyr_0138 0.64 -1.3
148,341 + Psyr_0138 0.64 -0.7
148,341 + Psyr_0138 0.64 +0.3
148,341 + Psyr_0138 0.64 -0.1
148,341 + Psyr_0138 0.64 -0.2
148,342 - Psyr_0138 0.64 +0.9
148,342 - Psyr_0138 0.64 -1.7
148,342 - Psyr_0138 0.64 -0.7
148,342 - Psyr_0138 0.64 +2.2
148,342 - Psyr_0138 0.64 +1.1
148,375 - Psyr_0138 0.65 +1.2
148,422 + Psyr_0138 0.67 -0.4
148,452 + Psyr_0138 0.68 +0.1
148,453 - Psyr_0138 0.68 +1.2
148,453 - Psyr_0138 0.68 -1.8
148,461 + Psyr_0138 0.69 +1.1
148,462 - Psyr_0138 0.69 +1.6
148,485 - Psyr_0138 0.70 +0.6
148,495 - Psyr_0138 0.70 -0.5
148,497 + Psyr_0138 0.70 +0.4
148,497 + Psyr_0138 0.70 +0.0
148,497 + Psyr_0138 0.70 +0.1
148,498 - Psyr_0138 0.70 +2.8
148,498 - Psyr_0138 0.70 -0.3
148,498 - Psyr_0138 0.70 -0.2
148,498 - Psyr_0138 0.70 +0.8
148,498 - Psyr_0138 0.70 -2.8
148,498 - Psyr_0138 0.70 -0.9
148,498 - Psyr_0138 0.70 +0.5
148,498 - Psyr_0138 0.70 +1.5
148,498 - Psyr_0138 0.70 +1.6
148,498 - Psyr_0138 0.70 +0.7
148,498 - Psyr_0138 0.70 -0.6
148,644 + Psyr_0138 0.75 +1.6
148,645 - Psyr_0138 0.75 -0.7
148,749 - Psyr_0138 0.79 -0.6
148,849 + Psyr_0138 0.83 -2.6
148,850 - Psyr_0138 0.83 -1.5
148,914 + Psyr_0138 0.85 +0.2
148,914 + Psyr_0138 0.85 +0.6
148,914 + Psyr_0138 0.85 -0.4
148,914 + Psyr_0138 0.85 +0.2
148,914 + Psyr_0138 0.85 +0.2
148,914 + Psyr_0138 0.85 +0.9
148,914 + Psyr_0138 0.85 -1.7
148,914 + Psyr_0138 0.85 +0.2
148,914 + Psyr_0138 0.85 -0.1
148,915 - Psyr_0138 0.85 +2.5
148,915 - Psyr_0138 0.85 -1.5
148,915 - Psyr_0138 0.85 +0.3
148,915 - Psyr_0138 0.85 +0.8
148,915 - Psyr_0138 0.85 +0.6
148,915 - Psyr_0138 0.85 -0.7
148,915 - Psyr_0138 0.85 -0.6
148,915 - Psyr_0138 0.85 -0.1
148,915 - Psyr_0138 0.85 +0.8
148,956 + Psyr_0138 0.87 -1.4
148,956 + Psyr_0138 0.87 +1.7
148,957 - Psyr_0138 0.87 -0.5
148,957 - Psyr_0138 0.87 -0.0
149,025 - Psyr_0138 0.89 -0.7
149,089 - +1.2
149,122 - -1.6
149,150 + -2.2
149,150 + +1.2
149,150 + +0.7
149,192 + +0.3
149,192 + +1.7
149,192 + +1.6
149,192 + +0.3
149,193 - +0.8
149,229 + -2.3
149,230 - +0.6
149,440 - -0.4
149,604 + +0.4
149,604 + -0.4
149,604 + -0.6
149,604 + +0.6
149,605 - -2.0
149,674 - Psyr_0139 0.12 -1.1
149,674 - Psyr_0139 0.12 +0.3
149,674 - Psyr_0139 0.12 -2.1
149,674 - Psyr_0139 0.12 +0.3
149,685 + Psyr_0139 0.12 -0.5
149,730 + Psyr_0139 0.14 -0.1
149,731 - Psyr_0139 0.15 +0.6
149,731 - Psyr_0139 0.15 -0.5
149,731 - Psyr_0139 0.15 +0.1
149,731 - Psyr_0139 0.15 -0.4
149,767 - Psyr_0139 0.16 +0.4
149,775 + Psyr_0139 0.17 +1.6
149,893 - Psyr_0139 0.23 -2.0
149,893 - Psyr_0139 0.23 -0.3
150,219 + Psyr_0139 0.40 -1.5
150,219 + Psyr_0139 0.40 -0.7
150,219 + Psyr_0139 0.40 -0.4
150,220 - Psyr_0139 0.40 +0.8
150,246 + Psyr_0139 0.42 +0.7
150,246 + Psyr_0139 0.42 +0.5
150,246 + Psyr_0139 0.42 +1.0
150,246 + Psyr_0139 0.42 -1.3
150,246 + Psyr_0139 0.42 +0.0
150,246 + Psyr_0139 0.42 -2.6
150,246 + Psyr_0139 0.42 +1.2
150,246 + Psyr_0139 0.42 -0.9
150,247 - Psyr_0139 0.42 +1.2
150,247 - Psyr_0139 0.42 -0.3
150,247 - Psyr_0139 0.42 +0.6
150,247 - Psyr_0139 0.42 -0.5
150,247 - Psyr_0139 0.42 +0.0
150,247 - Psyr_0139 0.42 +1.2
150,247 - Psyr_0139 0.42 +0.1
150,247 - Psyr_0139 0.42 +2.6
150,247 - Psyr_0139 0.42 -0.4
150,247 - Psyr_0139 0.42 -0.5
150,247 - Psyr_0139 0.42 +0.7
150,247 - Psyr_0139 0.42 -2.4
150,250 - Psyr_0139 0.42 -1.3
150,250 - Psyr_0139 0.42 +0.2
150,300 + Psyr_0139 0.45 +0.6
150,301 - Psyr_0139 0.45 -0.1
150,301 - Psyr_0139 0.45 -2.6

Or see this region's nucleotide sequence