Experiment: KB with L-alliin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4872 and Psyr_4873 are separated by 352 nucleotides Psyr_4873 and Psyr_4874 are separated by 26 nucleotides Psyr_4874 and Psyr_4875 overlap by 4 nucleotides Psyr_4875 and Psyr_4876 are separated by 28 nucleotides
Psyr_4872: Psyr_4872 - conserved hypothetical protein, at 5,783,922 to 5,785,244
_4872
Psyr_4873: Psyr_4873 - Molybdenum-pterin binding protein, at 5,785,597 to 5,785,812
_4873
Psyr_4874: Psyr_4874 - ABC transporter, at 5,785,839 to 5,786,651
_4874
Psyr_4875: Psyr_4875 - Binding-protein-dependent transport systems inner membrane component, at 5,786,648 to 5,787,445
_4875
Psyr_4876: Psyr_4876 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 5,787,474 to 5,788,439
_4876
Position (kb) 5785
5786
5787 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5784.842 kb on - strand, within Psyr_4872 at 5784.899 kb on + strand, within Psyr_4872 at 5784.899 kb on + strand, within Psyr_4872 at 5784.930 kb on - strand, within Psyr_4872 at 5785.077 kb on + strand, within Psyr_4872 at 5785.077 kb on + strand, within Psyr_4872 at 5785.078 kb on - strand, within Psyr_4872 at 5785.111 kb on + strand, within Psyr_4872 at 5785.211 kb on + strand at 5785.211 kb on + strand at 5785.212 kb on - strand at 5785.217 kb on + strand at 5785.230 kb on + strand at 5785.244 kb on + strand at 5785.244 kb on + strand at 5785.245 kb on - strand at 5785.245 kb on - strand at 5785.309 kb on - strand at 5785.309 kb on - strand at 5785.309 kb on - strand at 5785.309 kb on - strand at 5785.309 kb on - strand at 5785.334 kb on + strand at 5785.334 kb on + strand at 5785.334 kb on + strand at 5785.334 kb on + strand at 5785.335 kb on - strand at 5785.348 kb on + strand at 5785.348 kb on + strand at 5785.358 kb on + strand at 5785.359 kb on - strand at 5785.359 kb on - strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.444 kb on + strand at 5785.444 kb on + strand at 5785.444 kb on + strand at 5785.444 kb on + strand at 5785.444 kb on + strand at 5785.444 kb on + strand at 5785.444 kb on + strand at 5785.445 kb on - strand at 5785.445 kb on - strand at 5785.533 kb on - strand at 5785.598 kb on + strand at 5785.723 kb on + strand, within Psyr_4873 at 5785.723 kb on + strand, within Psyr_4873 at 5785.723 kb on + strand, within Psyr_4873 at 5785.724 kb on - strand, within Psyr_4873 at 5785.724 kb on - strand, within Psyr_4873 at 5785.724 kb on - strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.806 kb on + strand at 5785.806 kb on + strand at 5785.807 kb on - strand at 5785.854 kb on + strand at 5785.854 kb on + strand at 5785.854 kb on + strand at 5785.854 kb on + strand at 5785.854 kb on + strand at 5785.855 kb on - strand at 5785.855 kb on - strand at 5785.855 kb on - strand at 5785.855 kb on - strand at 5786.092 kb on + strand, within Psyr_4874 at 5786.093 kb on - strand, within Psyr_4874 at 5786.295 kb on + strand, within Psyr_4874 at 5786.296 kb on - strand, within Psyr_4874 at 5786.296 kb on - strand, within Psyr_4874 at 5786.296 kb on - strand, within Psyr_4874 at 5786.394 kb on - strand, within Psyr_4874 at 5786.751 kb on + strand, within Psyr_4875 at 5786.751 kb on + strand, within Psyr_4875 at 5786.751 kb on + strand, within Psyr_4875 at 5786.752 kb on - strand, within Psyr_4875 at 5786.752 kb on - strand, within Psyr_4875 at 5786.902 kb on + strand, within Psyr_4875 at 5786.902 kb on + strand, within Psyr_4875 at 5786.902 kb on + strand, within Psyr_4875 at 5786.903 kb on - strand, within Psyr_4875 at 5786.903 kb on - strand, within Psyr_4875 at 5786.903 kb on - strand, within Psyr_4875 at 5786.903 kb on - strand, within Psyr_4875 at 5786.903 kb on - strand, within Psyr_4875 at 5786.962 kb on - strand, within Psyr_4875 at 5786.978 kb on + strand, within Psyr_4875 at 5787.012 kb on + strand, within Psyr_4875 at 5787.012 kb on + strand, within Psyr_4875 at 5787.012 kb on + strand, within Psyr_4875 at 5787.012 kb on + strand, within Psyr_4875 at 5787.024 kb on + strand, within Psyr_4875 at 5787.059 kb on + strand, within Psyr_4875 at 5787.059 kb on + strand, within Psyr_4875 at 5787.059 kb on + strand, within Psyr_4875 at 5787.059 kb on + strand, within Psyr_4875 at 5787.060 kb on - strand, within Psyr_4875 at 5787.556 kb on + strand at 5787.557 kb on - strand at 5787.557 kb on - strand at 5787.603 kb on - strand, within Psyr_4876
Per-strain Table
Position Strand Gene LocusTag Fraction KB with L-alliin 10 mM remove 5,784,842 - Psyr_4872 0.70 +0.1 5,784,899 + Psyr_4872 0.74 -0.6 5,784,899 + Psyr_4872 0.74 -1.8 5,784,930 - Psyr_4872 0.76 +1.8 5,785,077 + Psyr_4872 0.87 -0.8 5,785,077 + Psyr_4872 0.87 +3.8 5,785,078 - Psyr_4872 0.87 +1.1 5,785,111 + Psyr_4872 0.90 -1.3 5,785,211 + -0.6 5,785,211 + +0.6 5,785,212 - -0.8 5,785,217 + -1.2 5,785,230 + -1.4 5,785,244 + +0.1 5,785,244 + +2.1 5,785,245 - +0.5 5,785,245 - +0.4 5,785,309 - +0.8 5,785,309 - -1.1 5,785,309 - +0.2 5,785,309 - -0.6 5,785,309 - +2.0 5,785,334 + -0.1 5,785,334 + +2.8 5,785,334 + -0.3 5,785,334 + -0.1 5,785,335 - +3.2 5,785,348 + +0.2 5,785,348 + -0.8 5,785,358 + -0.7 5,785,359 - -0.8 5,785,359 - -0.1 5,785,438 + +0.9 5,785,438 + +0.7 5,785,438 + -0.1 5,785,438 + +0.3 5,785,438 + -1.2 5,785,438 + -0.8 5,785,438 + -0.4 5,785,438 + +1.2 5,785,438 + +0.9 5,785,438 + +3.2 5,785,439 - +0.2 5,785,439 - -0.2 5,785,439 - -0.9 5,785,439 - -0.3 5,785,439 - -0.3 5,785,439 - +1.6 5,785,439 - +0.1 5,785,439 - -0.0 5,785,439 - -3.5 5,785,439 - -0.1 5,785,440 + -0.8 5,785,440 + -0.8 5,785,440 + -0.8 5,785,440 + -1.3 5,785,440 + +0.5 5,785,440 + -0.7 5,785,440 + +1.0 5,785,440 + +1.2 5,785,440 + +2.2 5,785,440 + +0.3 5,785,440 + -2.3 5,785,440 + -0.7 5,785,440 + +0.7 5,785,440 + +3.8 5,785,440 + -0.9 5,785,440 + -1.2 5,785,441 - +2.8 5,785,441 - -0.1 5,785,441 - +1.5 5,785,441 - -0.5 5,785,441 - +2.8 5,785,441 - +0.7 5,785,441 - +2.2 5,785,441 - +0.3 5,785,441 - -0.3 5,785,441 - -1.1 5,785,441 - +0.4 5,785,441 - +0.8 5,785,441 - -1.1 5,785,442 + +0.3 5,785,442 + +2.0 5,785,442 + +0.6 5,785,442 + -1.5 5,785,442 + -0.6 5,785,442 + -0.9 5,785,442 + +3.2 5,785,442 + -1.1 5,785,442 + +1.8 5,785,442 + +1.6 5,785,443 - +2.2 5,785,443 - +0.0 5,785,443 - +2.2 5,785,443 - +0.2 5,785,443 - +0.0 5,785,443 - +1.5 5,785,443 - -0.5 5,785,444 + -0.3 5,785,444 + -1.2 5,785,444 + -2.0 5,785,444 + +0.2 5,785,444 + -0.8 5,785,444 + +0.2 5,785,444 + -0.5 5,785,445 - -2.9 5,785,445 - +0.1 5,785,533 - +1.2 5,785,598 + -0.4 5,785,723 + Psyr_4873 0.58 -0.5 5,785,723 + Psyr_4873 0.58 +0.8 5,785,723 + Psyr_4873 0.58 -1.1 5,785,724 - Psyr_4873 0.59 +0.7 5,785,724 - Psyr_4873 0.59 +1.0 5,785,724 - Psyr_4873 0.59 +1.0 5,785,741 + Psyr_4873 0.67 -0.2 5,785,741 + Psyr_4873 0.67 -0.8 5,785,741 + Psyr_4873 0.67 +0.4 5,785,741 + Psyr_4873 0.67 +0.6 5,785,741 + Psyr_4873 0.67 -0.1 5,785,741 + Psyr_4873 0.67 -1.0 5,785,741 + Psyr_4873 0.67 -1.6 5,785,741 + Psyr_4873 0.67 -1.2 5,785,741 + Psyr_4873 0.67 -1.1 5,785,741 + Psyr_4873 0.67 -0.7 5,785,742 - Psyr_4873 0.67 +0.1 5,785,742 - Psyr_4873 0.67 +2.6 5,785,742 - Psyr_4873 0.67 +0.0 5,785,742 - Psyr_4873 0.67 -2.0 5,785,742 - Psyr_4873 0.67 +0.6 5,785,806 + -0.0 5,785,806 + -0.1 5,785,807 - +0.7 5,785,854 + +0.1 5,785,854 + +1.6 5,785,854 + +0.3 5,785,854 + +0.6 5,785,854 + -1.8 5,785,855 - -1.7 5,785,855 - +0.9 5,785,855 - +0.1 5,785,855 - -0.2 5,786,092 + Psyr_4874 0.31 -0.9 5,786,093 - Psyr_4874 0.31 +0.9 5,786,295 + Psyr_4874 0.56 -0.3 5,786,296 - Psyr_4874 0.56 +0.2 5,786,296 - Psyr_4874 0.56 -2.2 5,786,296 - Psyr_4874 0.56 +0.1 5,786,394 - Psyr_4874 0.68 -1.0 5,786,751 + Psyr_4875 0.13 -0.3 5,786,751 + Psyr_4875 0.13 +0.1 5,786,751 + Psyr_4875 0.13 -0.3 5,786,752 - Psyr_4875 0.13 -0.3 5,786,752 - Psyr_4875 0.13 +1.0 5,786,902 + Psyr_4875 0.32 +0.2 5,786,902 + Psyr_4875 0.32 -0.6 5,786,902 + Psyr_4875 0.32 +0.2 5,786,903 - Psyr_4875 0.32 +0.1 5,786,903 - Psyr_4875 0.32 -0.5 5,786,903 - Psyr_4875 0.32 -0.4 5,786,903 - Psyr_4875 0.32 -1.9 5,786,903 - Psyr_4875 0.32 +0.2 5,786,962 - Psyr_4875 0.39 -1.2 5,786,978 + Psyr_4875 0.41 +0.4 5,787,012 + Psyr_4875 0.46 +0.9 5,787,012 + Psyr_4875 0.46 +0.3 5,787,012 + Psyr_4875 0.46 -0.1 5,787,012 + Psyr_4875 0.46 -1.0 5,787,024 + Psyr_4875 0.47 +0.2 5,787,059 + Psyr_4875 0.52 +2.1 5,787,059 + Psyr_4875 0.52 +0.2 5,787,059 + Psyr_4875 0.52 -1.1 5,787,059 + Psyr_4875 0.52 +0.1 5,787,060 - Psyr_4875 0.52 +0.0 5,787,556 + -1.3 5,787,557 - -0.9 5,787,557 - +0.6 5,787,603 - Psyr_4876 0.13 -0.1
Or see this region's nucleotide sequence