Experiment: KB with L-alliin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4415 and Psyr_4416 overlap by 4 nucleotides Psyr_4416 and Psyr_4417 overlap by 8 nucleotides Psyr_4417 and Psyr_4418 are separated by 135 nucleotides
Psyr_4415: Psyr_4415 - cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase, at 5,279,267 to 5,280,001
_4415
Psyr_4416: Psyr_4416 - precorrin-8X methylmutase, at 5,279,998 to 5,280,624
_4416
Psyr_4417: Psyr_4417 - Ferredoxin--nitrite reductase, at 5,280,617 to 5,281,960
_4417
Psyr_4418: Psyr_4418 - Precorrin-6Y C5,15-methyltransferase (decarboxylating), at 5,282,096 to 5,283,298
_4418
Position (kb) 5280
5281
5282 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5279.643 kb on + strand, within Psyr_4415 at 5279.643 kb on + strand, within Psyr_4415 at 5279.643 kb on + strand, within Psyr_4415 at 5279.643 kb on + strand, within Psyr_4415 at 5279.643 kb on + strand, within Psyr_4415 at 5279.644 kb on - strand, within Psyr_4415 at 5279.644 kb on - strand, within Psyr_4415 at 5279.644 kb on - strand, within Psyr_4415 at 5279.644 kb on - strand, within Psyr_4415 at 5279.644 kb on - strand, within Psyr_4415 at 5279.649 kb on + strand, within Psyr_4415 at 5279.649 kb on + strand, within Psyr_4415 at 5279.649 kb on + strand, within Psyr_4415 at 5279.649 kb on + strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.658 kb on + strand, within Psyr_4415 at 5279.658 kb on + strand, within Psyr_4415 at 5279.742 kb on + strand, within Psyr_4415 at 5279.742 kb on + strand, within Psyr_4415 at 5279.743 kb on - strand, within Psyr_4415 at 5279.892 kb on + strand, within Psyr_4415 at 5280.114 kb on + strand, within Psyr_4416 at 5280.114 kb on + strand, within Psyr_4416 at 5280.200 kb on + strand, within Psyr_4416 at 5280.200 kb on + strand, within Psyr_4416 at 5280.201 kb on - strand, within Psyr_4416 at 5280.201 kb on - strand, within Psyr_4416 at 5280.201 kb on - strand, within Psyr_4416 at 5280.590 kb on + strand at 5280.591 kb on - strand at 5280.592 kb on + strand at 5280.592 kb on + strand at 5280.592 kb on + strand at 5280.592 kb on + strand at 5280.592 kb on + strand at 5280.592 kb on + strand at 5280.593 kb on - strand at 5280.593 kb on - strand at 5280.593 kb on - strand at 5280.614 kb on + strand at 5280.614 kb on + strand at 5280.673 kb on + strand at 5280.673 kb on + strand at 5280.674 kb on - strand at 5280.674 kb on - strand at 5280.674 kb on - strand at 5280.676 kb on + strand at 5280.730 kb on - strand at 5280.777 kb on - strand, within Psyr_4417 at 5280.833 kb on - strand, within Psyr_4417 at 5281.115 kb on + strand, within Psyr_4417 at 5281.116 kb on - strand, within Psyr_4417 at 5281.219 kb on - strand, within Psyr_4417 at 5281.373 kb on + strand, within Psyr_4417 at 5281.788 kb on + strand, within Psyr_4417 at 5282.002 kb on - strand at 5282.013 kb on - strand at 5282.013 kb on - strand at 5282.030 kb on - strand at 5282.032 kb on + strand at 5282.032 kb on + strand at 5282.032 kb on + strand at 5282.089 kb on + strand at 5282.089 kb on + strand at 5282.089 kb on + strand at 5282.090 kb on - strand at 5282.090 kb on - strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.138 kb on + strand at 5282.138 kb on + strand at 5282.373 kb on + strand, within Psyr_4418 at 5282.373 kb on + strand, within Psyr_4418 at 5282.373 kb on + strand, within Psyr_4418 at 5282.374 kb on - strand, within Psyr_4418 at 5282.408 kb on + strand, within Psyr_4418 at 5282.409 kb on - strand, within Psyr_4418 at 5282.409 kb on - strand, within Psyr_4418
Per-strain Table
Position Strand Gene LocusTag Fraction KB with L-alliin 10 mM remove 5,279,643 + Psyr_4415 0.51 -0.9 5,279,643 + Psyr_4415 0.51 +0.6 5,279,643 + Psyr_4415 0.51 -2.9 5,279,643 + Psyr_4415 0.51 -1.4 5,279,643 + Psyr_4415 0.51 -1.0 5,279,644 - Psyr_4415 0.51 -2.1 5,279,644 - Psyr_4415 0.51 +1.1 5,279,644 - Psyr_4415 0.51 -1.4 5,279,644 - Psyr_4415 0.51 +0.9 5,279,644 - Psyr_4415 0.51 +0.1 5,279,649 + Psyr_4415 0.52 -1.5 5,279,649 + Psyr_4415 0.52 +0.1 5,279,649 + Psyr_4415 0.52 +1.1 5,279,649 + Psyr_4415 0.52 -2.1 5,279,650 - Psyr_4415 0.52 -2.9 5,279,650 - Psyr_4415 0.52 -0.4 5,279,650 - Psyr_4415 0.52 +1.4 5,279,650 - Psyr_4415 0.52 -1.9 5,279,658 + Psyr_4415 0.53 -0.2 5,279,658 + Psyr_4415 0.53 -2.3 5,279,742 + Psyr_4415 0.65 +0.3 5,279,742 + Psyr_4415 0.65 -0.4 5,279,743 - Psyr_4415 0.65 -2.9 5,279,892 + Psyr_4415 0.85 -1.7 5,280,114 + Psyr_4416 0.19 -3.6 5,280,114 + Psyr_4416 0.19 -0.6 5,280,200 + Psyr_4416 0.32 -0.1 5,280,200 + Psyr_4416 0.32 -1.6 5,280,201 - Psyr_4416 0.32 -2.3 5,280,201 - Psyr_4416 0.32 -1.9 5,280,201 - Psyr_4416 0.32 -0.1 5,280,590 + -2.4 5,280,591 - -0.9 5,280,592 + +0.8 5,280,592 + -1.6 5,280,592 + +0.3 5,280,592 + -0.0 5,280,592 + -2.0 5,280,592 + +0.3 5,280,593 - -1.3 5,280,593 - -0.9 5,280,593 - +0.7 5,280,614 + +0.6 5,280,614 + -0.2 5,280,673 + -0.4 5,280,673 + -2.3 5,280,674 - +0.8 5,280,674 - -1.4 5,280,674 - -1.9 5,280,676 + +0.0 5,280,730 - +0.6 5,280,777 - Psyr_4417 0.12 -0.4 5,280,833 - Psyr_4417 0.16 +1.9 5,281,115 + Psyr_4417 0.37 -0.1 5,281,116 - Psyr_4417 0.37 -0.6 5,281,219 - Psyr_4417 0.45 -0.3 5,281,373 + Psyr_4417 0.56 +1.1 5,281,788 + Psyr_4417 0.87 -1.0 5,282,002 - +0.1 5,282,013 - -0.1 5,282,013 - -1.1 5,282,030 - -0.0 5,282,032 + -0.7 5,282,032 + -0.1 5,282,032 + +1.4 5,282,089 + +1.1 5,282,089 + -0.5 5,282,089 + -0.8 5,282,090 - -0.2 5,282,090 - -0.2 5,282,093 + +2.5 5,282,093 + -1.3 5,282,093 + +1.3 5,282,093 + +0.9 5,282,093 + -0.1 5,282,093 + -0.7 5,282,093 + +1.1 5,282,093 + +0.1 5,282,093 + +1.0 5,282,093 + -0.1 5,282,093 + +0.5 5,282,093 + +0.9 5,282,094 - +2.9 5,282,094 - -1.6 5,282,094 - +3.6 5,282,094 - -0.2 5,282,094 - -1.3 5,282,094 - -0.1 5,282,094 - -0.8 5,282,094 - -1.4 5,282,094 - +2.1 5,282,094 - -1.1 5,282,138 + -0.9 5,282,138 + +0.6 5,282,373 + Psyr_4418 0.23 -0.1 5,282,373 + Psyr_4418 0.23 -1.3 5,282,373 + Psyr_4418 0.23 +0.0 5,282,374 - Psyr_4418 0.23 +0.9 5,282,408 + Psyr_4418 0.26 -2.3 5,282,409 - Psyr_4418 0.26 -0.4 5,282,409 - Psyr_4418 0.26 -2.7
Or see this region's nucleotide sequence