Experiment: KB with L-alliin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4233 and Psyr_4234 are separated by 96 nucleotides Psyr_4234 and Psyr_4235 are separated by 257 nucleotides
Psyr_4233: Psyr_4233 - PhcA, at 5,041,254 to 5,042,810
_4233
Psyr_4234: Psyr_4234 - extracellular solute-binding protein, family 5, at 5,042,907 to 5,044,514
_4234
Psyr_4235: Psyr_4235 - extracellular solute-binding protein, family 5, at 5,044,772 to 5,046,400
_4235
Position (kb) 5042
5043
5044
5045 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5042.024 kb on + strand, within Psyr_4233 at 5042.024 kb on + strand, within Psyr_4233 at 5042.043 kb on - strand, within Psyr_4233 at 5042.147 kb on + strand, within Psyr_4233 at 5042.148 kb on - strand, within Psyr_4233 at 5042.196 kb on + strand, within Psyr_4233 at 5042.197 kb on - strand, within Psyr_4233 at 5042.265 kb on + strand, within Psyr_4233 at 5042.265 kb on + strand, within Psyr_4233 at 5042.391 kb on - strand, within Psyr_4233 at 5042.497 kb on + strand, within Psyr_4233 at 5042.497 kb on + strand, within Psyr_4233 at 5042.497 kb on + strand, within Psyr_4233 at 5042.497 kb on + strand, within Psyr_4233 at 5042.498 kb on - strand, within Psyr_4233 at 5042.726 kb on + strand at 5042.808 kb on + strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.814 kb on + strand at 5042.814 kb on + strand at 5042.814 kb on + strand at 5042.814 kb on + strand at 5042.815 kb on - strand at 5042.815 kb on - strand at 5042.815 kb on - strand at 5042.836 kb on - strand at 5042.843 kb on + strand at 5042.854 kb on + strand at 5042.855 kb on - strand at 5042.855 kb on - strand at 5042.855 kb on - strand at 5042.891 kb on - strand at 5042.994 kb on + strand at 5042.994 kb on + strand at 5042.994 kb on + strand at 5042.994 kb on + strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5043.037 kb on - strand at 5043.168 kb on + strand, within Psyr_4234 at 5043.168 kb on + strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.213 kb on + strand, within Psyr_4234 at 5043.213 kb on + strand, within Psyr_4234 at 5043.213 kb on + strand, within Psyr_4234 at 5043.303 kb on + strand, within Psyr_4234 at 5043.466 kb on - strand, within Psyr_4234 at 5043.573 kb on + strand, within Psyr_4234 at 5043.573 kb on + strand, within Psyr_4234 at 5043.585 kb on - strand, within Psyr_4234 at 5043.591 kb on + strand, within Psyr_4234 at 5043.592 kb on - strand, within Psyr_4234 at 5043.789 kb on + strand, within Psyr_4234 at 5043.789 kb on + strand, within Psyr_4234 at 5043.789 kb on + strand, within Psyr_4234 at 5043.790 kb on - strand, within Psyr_4234 at 5043.880 kb on - strand, within Psyr_4234 at 5044.134 kb on + strand, within Psyr_4234 at 5044.134 kb on + strand, within Psyr_4234 at 5044.134 kb on + strand, within Psyr_4234 at 5044.135 kb on - strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.191 kb on + strand, within Psyr_4234 at 5044.191 kb on + strand, within Psyr_4234 at 5044.208 kb on + strand, within Psyr_4234 at 5044.242 kb on + strand, within Psyr_4234 at 5044.243 kb on - strand, within Psyr_4234 at 5044.272 kb on + strand, within Psyr_4234 at 5044.273 kb on - strand, within Psyr_4234 at 5044.273 kb on - strand, within Psyr_4234 at 5044.356 kb on + strand at 5044.357 kb on - strand at 5044.357 kb on - strand at 5044.357 kb on - strand at 5044.357 kb on - strand at 5044.357 kb on - strand at 5044.485 kb on + strand at 5044.485 kb on + strand at 5044.485 kb on + strand at 5044.485 kb on + strand at 5044.485 kb on + strand at 5044.486 kb on - strand at 5044.512 kb on + strand at 5044.512 kb on + strand at 5044.512 kb on + strand at 5044.513 kb on - strand at 5044.606 kb on + strand at 5044.618 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.708 kb on + strand at 5044.709 kb on - strand at 5044.709 kb on - strand at 5044.742 kb on + strand at 5044.901 kb on + strand at 5044.901 kb on + strand at 5044.913 kb on - strand at 5045.033 kb on + strand, within Psyr_4235 at 5045.033 kb on + strand, within Psyr_4235 at 5045.033 kb on + strand, within Psyr_4235 at 5045.033 kb on + strand, within Psyr_4235 at 5045.033 kb on + strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.078 kb on + strand, within Psyr_4235 at 5045.078 kb on + strand, within Psyr_4235 at 5045.186 kb on + strand, within Psyr_4235 at 5045.330 kb on + strand, within Psyr_4235 at 5045.330 kb on + strand, within Psyr_4235 at 5045.331 kb on - strand, within Psyr_4235 at 5045.414 kb on + strand, within Psyr_4235
Per-strain Table
Position Strand Gene LocusTag Fraction KB with L-alliin 10 mM remove 5,042,024 + Psyr_4233 0.49 +0.4 5,042,024 + Psyr_4233 0.49 +2.1 5,042,043 - Psyr_4233 0.51 +0.8 5,042,147 + Psyr_4233 0.57 -0.1 5,042,148 - Psyr_4233 0.57 +0.4 5,042,196 + Psyr_4233 0.61 -0.9 5,042,197 - Psyr_4233 0.61 +0.1 5,042,265 + Psyr_4233 0.65 +1.3 5,042,265 + Psyr_4233 0.65 -0.1 5,042,391 - Psyr_4233 0.73 +0.2 5,042,497 + Psyr_4233 0.80 +2.7 5,042,497 + Psyr_4233 0.80 +4.0 5,042,497 + Psyr_4233 0.80 -0.4 5,042,497 + Psyr_4233 0.80 -0.8 5,042,498 - Psyr_4233 0.80 -0.8 5,042,726 + +1.3 5,042,808 + -0.9 5,042,809 - -0.5 5,042,809 - -1.8 5,042,809 - +2.1 5,042,809 - -2.5 5,042,809 - +1.1 5,042,809 - -0.2 5,042,809 - +2.7 5,042,809 - +1.7 5,042,809 - +0.6 5,042,814 + -0.4 5,042,814 + +0.7 5,042,814 + +0.7 5,042,814 + +0.2 5,042,815 - +0.0 5,042,815 - +1.0 5,042,815 - +0.2 5,042,836 - -1.5 5,042,843 + +0.2 5,042,854 + -0.9 5,042,855 - +1.0 5,042,855 - +0.0 5,042,855 - +0.6 5,042,891 - -1.2 5,042,994 + +0.1 5,042,994 + +0.5 5,042,994 + -0.8 5,042,994 + +0.4 5,042,995 - +0.4 5,042,995 - +0.9 5,042,995 - -0.1 5,042,995 - +1.4 5,042,995 - +0.3 5,042,995 - +0.3 5,042,995 - +0.4 5,043,037 - +2.1 5,043,168 + Psyr_4234 0.16 +0.5 5,043,168 + Psyr_4234 0.16 +1.0 5,043,169 - Psyr_4234 0.16 +1.1 5,043,169 - Psyr_4234 0.16 +3.0 5,043,169 - Psyr_4234 0.16 -1.0 5,043,169 - Psyr_4234 0.16 +0.8 5,043,213 + Psyr_4234 0.19 -1.9 5,043,213 + Psyr_4234 0.19 -1.0 5,043,213 + Psyr_4234 0.19 +0.3 5,043,303 + Psyr_4234 0.25 -1.8 5,043,466 - Psyr_4234 0.35 +1.8 5,043,573 + Psyr_4234 0.41 +0.9 5,043,573 + Psyr_4234 0.41 -0.2 5,043,585 - Psyr_4234 0.42 -0.5 5,043,591 + Psyr_4234 0.43 +0.3 5,043,592 - Psyr_4234 0.43 +0.2 5,043,789 + Psyr_4234 0.55 +0.8 5,043,789 + Psyr_4234 0.55 -0.4 5,043,789 + Psyr_4234 0.55 -1.8 5,043,790 - Psyr_4234 0.55 +0.1 5,043,880 - Psyr_4234 0.61 -1.4 5,044,134 + Psyr_4234 0.76 +1.0 5,044,134 + Psyr_4234 0.76 +0.5 5,044,134 + Psyr_4234 0.76 -0.7 5,044,135 - Psyr_4234 0.76 -0.6 5,044,149 + Psyr_4234 0.77 +0.3 5,044,149 + Psyr_4234 0.77 -0.6 5,044,149 + Psyr_4234 0.77 -0.1 5,044,149 + Psyr_4234 0.77 +0.4 5,044,149 + Psyr_4234 0.77 +0.6 5,044,149 + Psyr_4234 0.77 +0.8 5,044,149 + Psyr_4234 0.77 +0.1 5,044,149 + Psyr_4234 0.77 +0.9 5,044,150 - Psyr_4234 0.77 +1.1 5,044,150 - Psyr_4234 0.77 +0.2 5,044,150 - Psyr_4234 0.77 -0.1 5,044,150 - Psyr_4234 0.77 +0.2 5,044,150 - Psyr_4234 0.77 +0.3 5,044,150 - Psyr_4234 0.77 +0.1 5,044,150 - Psyr_4234 0.77 +0.1 5,044,150 - Psyr_4234 0.77 -1.5 5,044,191 + Psyr_4234 0.80 -0.8 5,044,191 + Psyr_4234 0.80 +0.9 5,044,208 + Psyr_4234 0.81 +1.0 5,044,242 + Psyr_4234 0.83 -1.2 5,044,243 - Psyr_4234 0.83 -0.6 5,044,272 + Psyr_4234 0.85 +2.5 5,044,273 - Psyr_4234 0.85 +0.0 5,044,273 - Psyr_4234 0.85 +0.8 5,044,356 + +0.8 5,044,357 - -0.7 5,044,357 - -0.3 5,044,357 - -0.5 5,044,357 - +0.9 5,044,357 - -1.2 5,044,485 + +0.8 5,044,485 + -0.0 5,044,485 + +0.8 5,044,485 + +0.3 5,044,485 + -1.0 5,044,486 - +0.3 5,044,512 + -0.5 5,044,512 + +0.0 5,044,512 + -1.2 5,044,513 - -0.6 5,044,606 + -0.3 5,044,618 + -0.7 5,044,704 + -0.6 5,044,704 + -3.1 5,044,704 + -0.2 5,044,704 + +1.1 5,044,704 + -0.0 5,044,704 + -0.2 5,044,705 - -1.6 5,044,705 - +0.0 5,044,705 - +0.1 5,044,705 - +0.2 5,044,705 - -1.3 5,044,705 - -0.9 5,044,705 - -1.7 5,044,705 - +0.0 5,044,705 - +0.3 5,044,705 - +3.7 5,044,708 + -0.1 5,044,709 - -0.1 5,044,709 - +2.9 5,044,742 + +0.1 5,044,901 + +0.9 5,044,901 + -0.3 5,044,913 - -0.4 5,045,033 + Psyr_4235 0.16 -0.2 5,045,033 + Psyr_4235 0.16 +0.4 5,045,033 + Psyr_4235 0.16 -0.5 5,045,033 + Psyr_4235 0.16 +1.3 5,045,033 + Psyr_4235 0.16 -0.8 5,045,034 - Psyr_4235 0.16 -0.0 5,045,034 - Psyr_4235 0.16 +1.3 5,045,034 - Psyr_4235 0.16 +0.1 5,045,034 - Psyr_4235 0.16 -0.3 5,045,034 - Psyr_4235 0.16 -0.5 5,045,034 - Psyr_4235 0.16 -0.2 5,045,034 - Psyr_4235 0.16 +0.7 5,045,078 + Psyr_4235 0.19 +1.2 5,045,078 + Psyr_4235 0.19 -0.7 5,045,186 + Psyr_4235 0.25 -0.2 5,045,330 + Psyr_4235 0.34 +0.8 5,045,330 + Psyr_4235 0.34 +0.0 5,045,331 - Psyr_4235 0.34 +0.9 5,045,414 + Psyr_4235 0.39 +0.9
Or see this region's nucleotide sequence