Experiment: KB with L-alliin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3899 and Psyr_3900 are separated by 132 nucleotides Psyr_3900 and Psyr_3901 are separated by 453 nucleotides Psyr_3901 and Psyr_3902 overlap by 4 nucleotides
Psyr_3899: Psyr_3899 - Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region, at 4,639,221 to 4,641,329
_3899
Psyr_3900: Psyr_3900 - conserved hypothetical protein, at 4,641,462 to 4,641,755
_3900
Psyr_3901: Psyr_3901 - ornithine carbamoyltransferase, at 4,642,209 to 4,643,129
_3901
Psyr_3902: Psyr_3902 - ABC transporter:TOBE, at 4,643,126 to 4,644,199
_3902
Position (kb) 4642
4643
4644 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4641.380 kb on + strand at 4641.381 kb on - strand at 4641.381 kb on - strand at 4641.698 kb on + strand, within Psyr_3900 at 4641.698 kb on + strand, within Psyr_3900 at 4641.699 kb on - strand, within Psyr_3900 at 4641.699 kb on - strand, within Psyr_3900 at 4641.733 kb on - strand at 4641.733 kb on - strand at 4641.775 kb on + strand at 4641.775 kb on + strand at 4641.775 kb on + strand at 4641.780 kb on + strand at 4641.780 kb on + strand at 4641.794 kb on + strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.797 kb on - strand at 4641.896 kb on + strand at 4641.900 kb on - strand at 4641.900 kb on - strand at 4641.900 kb on - strand at 4641.926 kb on + strand at 4641.926 kb on + strand at 4641.927 kb on - strand at 4641.978 kb on - strand at 4642.036 kb on + strand at 4642.036 kb on + strand at 4642.036 kb on + strand at 4642.037 kb on + strand at 4642.039 kb on + strand at 4642.091 kb on + strand at 4642.174 kb on + strand at 4642.200 kb on + strand at 4643.394 kb on - strand, within Psyr_3902 at 4643.401 kb on - strand, within Psyr_3902 at 4643.786 kb on + strand, within Psyr_3902 at 4643.843 kb on + strand, within Psyr_3902 at 4643.843 kb on + strand, within Psyr_3902 at 4643.844 kb on - strand, within Psyr_3902 at 4643.844 kb on - strand, within Psyr_3902 at 4643.844 kb on - strand, within Psyr_3902 at 4643.844 kb on - strand, within Psyr_3902 at 4643.844 kb on - strand, within Psyr_3902 at 4643.898 kb on + strand, within Psyr_3902 at 4643.918 kb on + strand, within Psyr_3902 at 4643.955 kb on + strand, within Psyr_3902 at 4643.955 kb on + strand, within Psyr_3902 at 4643.955 kb on + strand, within Psyr_3902 at 4644.041 kb on + strand, within Psyr_3902 at 4644.042 kb on - strand, within Psyr_3902
Per-strain Table
Position Strand Gene LocusTag Fraction KB with L-alliin 10 mM remove 4,641,380 + -1.4 4,641,381 - +1.0 4,641,381 - -2.8 4,641,698 + Psyr_3900 0.80 +0.0 4,641,698 + Psyr_3900 0.80 -0.4 4,641,699 - Psyr_3900 0.81 +0.6 4,641,699 - Psyr_3900 0.81 -0.4 4,641,733 - -1.4 4,641,733 - -1.5 4,641,775 + -2.0 4,641,775 + +0.7 4,641,775 + +0.2 4,641,780 + +0.3 4,641,780 + -0.5 4,641,794 + -0.4 4,641,795 - -0.5 4,641,795 - -0.4 4,641,795 - +1.3 4,641,795 - -1.3 4,641,795 - -0.5 4,641,795 - +0.6 4,641,795 - -0.0 4,641,795 - -1.3 4,641,797 - +1.0 4,641,896 + -1.0 4,641,900 - -0.5 4,641,900 - +4.9 4,641,900 - -0.2 4,641,926 + +1.5 4,641,926 + -0.4 4,641,927 - -0.7 4,641,978 - -1.1 4,642,036 + +0.1 4,642,036 + -0.8 4,642,036 + -0.0 4,642,037 + -0.7 4,642,039 + -0.2 4,642,091 + -2.0 4,642,174 + +0.0 4,642,200 + -0.1 4,643,394 - Psyr_3902 0.25 +0.6 4,643,401 - Psyr_3902 0.26 -1.1 4,643,786 + Psyr_3902 0.61 +1.2 4,643,843 + Psyr_3902 0.67 -1.7 4,643,843 + Psyr_3902 0.67 -0.3 4,643,844 - Psyr_3902 0.67 -0.7 4,643,844 - Psyr_3902 0.67 -0.1 4,643,844 - Psyr_3902 0.67 +0.6 4,643,844 - Psyr_3902 0.67 +3.0 4,643,844 - Psyr_3902 0.67 -0.2 4,643,898 + Psyr_3902 0.72 +0.5 4,643,918 + Psyr_3902 0.74 +3.6 4,643,955 + Psyr_3902 0.77 +0.2 4,643,955 + Psyr_3902 0.77 -0.7 4,643,955 + Psyr_3902 0.77 -1.4 4,644,041 + Psyr_3902 0.85 +0.8 4,644,042 - Psyr_3902 0.85 +0.3
Or see this region's nucleotide sequence